SMTL ID : 7hni.1

PanDDA analysis group deposition -- Crystal Structure of TRIM21 in complex with Z373768900

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: W.21, M.33, F.171, N.172, Y.173 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.172, A:N.172 EDO.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x NUA: N-(1-ethyl-1H-pyrazol-4-yl)cyclobutanecarboxamide(Non-covalent)

NUA.2: 9 residues within 4Å: Chain A: R.82, P.95, E.96, W.100, F.154, S.155, E.156, C.157, V.158 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.95, A:F.154 Hydrogen bonds: A:V.158 Water bridges: A:E.156

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.3: 8 residues within 4Å: Chain A: W.76, D.77, S.92, L.93, W.103, L.104, N.168, G.170 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.93, A:N.168 Water bridges: A:F.171 Salt bridges: A:D.77, A:D.77

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: F.91, S.92, N.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.92, A:N.97 Water bridges: A:S.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., PanDDA analysis group deposition. To Be Published

Release Date

2024-11-27

Peptides

E3 ubiquitin-protein ligase TRIM21: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase TRIM21

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