SMTL ID : 7hnn.1

PanDDA analysis group deposition -- Crystal Structure of TRIM21 in complex with Z31432226

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.31 Å

Oligo State

monomer

Ligands

1 x JGP: (azepan-1-yl)(2H-1,3-benzodioxol-5-yl)methanone(Non-covalent)

JGP.1: 10 residues within 4Å: Chain A: N.19, W.21, M.33, S.48, N.49, Y.50, P.51, F.171, N.172, Y.173 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.51, A:F.171, A:Y.173 Hydrogen bonds: A:N.19, A:N.172 pi-Stacking: A:F.171

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: F.91, S.92, N.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.92, A:N.97 Water bridges: A:S.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., PanDDA analysis group deposition. To Be Published

Release Date

2024-11-27

Peptides

E3 ubiquitin-protein ligase TRIM21: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase TRIM21

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