SMTL ID : 7m72.1

MHC-like protein complex structure

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.40 Å
Oligo State
hetero-1-1-1-1-mer
Ligands
2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x QOD: (3R)-N-[(2S,3R)-1-(alpha-D-galactopyranosyloxy)-3-hydroxy-15-methylhexadecan-2-yl]-3-hydroxyheptadecanamide(Non-covalent)
1 x HP6: HEPTANE(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Oh, S.F. et al., Host immunomodulatory lipids created by symbionts from dietary amino acids. Nature (2021)
Release Date
2021-11-10
Peptides
Antigen-presenting glycoprotein CD1d1: A
Beta-2-microglobulin: B
NKT Valpha14 (Mouse)-2C12 TCR,Human T-cell receptor sp3.4 alpha chain: C
NKT Vbeta8.2 (Mouse)-2C12 TCR,Human nkt tcr beta chain: D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D

Antigen-presenting glycoprotein CD1d1

Beta-2-microglobulin

NKT Valpha14 (Mouse)-2C12 TCR,Human T-cell receptor sp3.4 alpha chain

NKT Vbeta8.2 (Mouse)-2C12 TCR,Human nkt tcr beta chain

Related Entries With Identical Sequence

1p4l.1 | 1u58.1 | 1z5l.1 | 1z5l.2 | 1z5l.3 | 2akr.1 | 2akr.2 | 2akr.3 | 2akr.4 | 2fik.1 | 2gaz.1 | 2q7y.1 | 2q7y.2 | 3arb.1 | 3ard.1 | 3are.1 | 3arf.1 | 3arg.1 | 3au1.1 | 3c8k.1 | 3g08.1 | 3gml.1 | 3gmm.1 | 3gmn.1 | 3gmo.1 | 3gmp.1 | 3gmq.1 | 3gmr.1 | 3he6.1 | 3he7.1  more...