SMTL ID : 7m99.1

ATPgS bound TnsC filament from ShCAST system

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-octamer

Ligands

7 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 19 residues within 4Å: Chain A: Q.185, R.189 Chain B: K.31, S.32, I.33, V.34, L.36, S.62, R.63, T.64, G.65, K.66, T.67, V.68, W.211, I.241, G.242, D.245 Ligands: MG.2 17 PLIP interactions: 14 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:K.31, B:K.31, B:V.34, B:V.34, B:R.63, B:T.64, B:G.65, B:G.65, B:K.66, B:T.67, B:V.68, B:D.245, A:Q.185, A:R.189, A:R.189 Salt bridges: B:R.63, B:K.66 AGS.3: 18 residues within 4Å: Chain B: Q.185, R.189 Chain C: K.31, S.32, V.34, L.36, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, W.211, I.241, D.245 Ligands: MG.4 18 PLIP interactions: 16 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:K.31, C:K.31, C:V.34, C:V.34, C:S.62, C:R.63, C:T.64, C:G.65, C:G.65, C:K.66, C:K.66, C:T.67, C:V.68, C:D.245, B:Q.185, B:R.189 Salt bridges: C:R.63, C:K.66 AGS.5: 20 residues within 4Å: Chain C: Q.185, R.189 Chain D: S.32, I.33, V.34, L.36, V.39, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, D.245 Ligands: MG.6 15 PLIP interactions: 1 interactions with chain C, 14 interactions with chain D Hydrogen bonds: C:Q.185, D:V.34, D:V.34, D:S.62, D:R.63, D:T.64, D:G.65, D:G.65, D:K.66, D:K.66, D:T.67, D:V.68, D:D.245 Salt bridges: D:R.63, D:K.66 AGS.7: 19 residues within 4Å: Chain D: Q.185, R.189 Chain E: K.31, S.32, I.33, V.34, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, W.211, I.241, G.242, D.245 Ligands: MG.8 18 PLIP interactions: 17 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:K.31, E:K.31, E:V.34, E:V.34, E:S.62, E:R.63, E:R.63, E:T.64, E:G.65, E:G.65, E:K.66, E:K.66, E:T.67, E:V.68, E:D.245, D:Q.185 Salt bridges: E:R.63, E:K.66 AGS.9: 19 residues within 4Å: Chain E: Q.185, R.189 Chain F: S.32, I.33, V.34, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 Ligands: MG.10 12 PLIP interactions: 11 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:V.34, F:V.34, F:R.63, F:T.64, F:G.65, F:K.66, F:T.67, F:T.67, F:V.68, F:D.245, E:Q.185 Salt bridges: F:K.66 AGS.11: 17 residues within 4Å: Chain F: Q.185, R.189 Chain G: K.31, S.32, I.33, V.34, L.36, S.62, R.63, T.64, G.65, K.66, T.67, V.68, I.241, D.245 Ligands: MG.12 19 PLIP interactions: 16 interactions with chain G, 3 interactions with chain F Hydrogen bonds: G:K.31, G:K.31, G:V.34, G:V.34, G:R.63, G:T.64, G:G.65, G:G.65, G:K.66, G:K.66, G:T.67, G:T.67, G:V.68, G:D.245, F:Q.185, F:R.189, F:R.189 Salt bridges: G:R.63, G:K.66 AGS.13: 19 residues within 4Å: Chain G: Q.185, R.189 Chain H: S.32, I.33, V.34, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 Ligands: MG.14 15 PLIP interactions: 13 interactions with chain H, 2 interactions with chain G Hydrogen bonds: H:V.34, H:V.34, H:R.63, H:R.63, H:R.63, H:T.64, H:G.65, H:K.66, H:K.66, H:T.67, H:V.68, H:D.245, G:Q.185, G:R.189 Salt bridges: H:K.66

7 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain B: T.67 Ligands: AGS.1 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.67 MG.4: 3 residues within 4Å: Chain C: T.67, E.145 Ligands: AGS.3 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.67 MG.6: 3 residues within 4Å: Chain D: T.67, E.145 Ligands: AGS.5 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:T.67 MG.8: 2 residues within 4Å: Chain E: T.67 Ligands: AGS.7 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:T.67 MG.10: 2 residues within 4Å: Chain F: T.67 Ligands: AGS.9 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:T.67 MG.12: 4 residues within 4Å: Chain F: E.162 Chain G: T.67, D.144 Ligands: AGS.11 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:T.67 MG.14: 2 residues within 4Å: Chain H: T.67 Ligands: AGS.13 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:T.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, J.U. et al., Structural basis for target site selection in RNA-guided DNA transposition systems. Science (2021)

Release Date

2021-07-28

Peptides

TnsC: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

TnsC

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