- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-7-1-1-mer
- Ligands
- 7 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.1: 21 residues within 4Å:- Chain E: K.31, S.32, V.34, V.39, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245
- Chain F: E.162, Q.185, R.189
- Ligands: MG.2
17 PLIP interactions:2 interactions with chain F, 15 interactions with chain E- Hydrogen bonds: F:Q.185, E:V.34, E:V.34, E:R.63, E:T.64, E:G.65, E:K.66, E:T.67, E:T.67, E:V.68, E:E.145
- Salt bridges: F:R.189, E:K.31, E:R.63, E:R.63, E:K.66, E:K.66
ATP.3: 21 residues within 4Å:- Chain F: S.32, V.34, V.39, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245, E.246
- Chain G: R.158, Q.185, R.189
- Ligands: MG.4
12 PLIP interactions:10 interactions with chain F, 2 interactions with chain G- Hydrogen bonds: F:V.34, F:V.34, F:R.63, F:T.64, F:G.65, F:T.67, F:T.67, F:V.68, F:E.246, G:R.158
- Salt bridges: F:K.66, G:R.189
ATP.5: 20 residues within 4Å:- Chain G: K.31, S.32, I.33, V.34, V.39, S.62, R.63, T.64, G.65, K.66, T.67, V.68, W.211, I.241, G.242, D.245
- Chain H: R.158, E.162, R.189
- Ligands: MG.6
13 PLIP interactions:11 interactions with chain G, 2 interactions with chain H- Hydrogen bonds: G:V.34, G:V.34, G:R.63, G:T.64, G:G.65, G:K.66, G:T.67, G:T.67, G:V.68
- Salt bridges: G:R.63, G:R.63, H:R.158, H:R.189
ATP.7: 23 residues within 4Å:- Chain H: K.31, S.32, I.33, V.34, Q.38, V.39, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, I.241, G.242, D.245, R.249
- Chain I: E.162, Q.185, R.189
- Ligands: MG.8
17 PLIP interactions:16 interactions with chain H, 1 interactions with chain I- Hydrogen bonds: H:K.31, H:K.31, H:V.34, H:V.34, H:Q.38, H:E.61, H:R.63, H:T.64, H:G.65, H:K.66, H:T.67, H:T.67, H:V.68, H:D.245, H:R.249
- Salt bridges: H:K.66, I:R.189
ATP.9: 20 residues within 4Å:- Chain I: K.31, S.32, V.34, V.39, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245
- Chain J: Q.185, R.189
- Ligands: MG.10
16 PLIP interactions:15 interactions with chain I, 1 interactions with chain J- Hydrogen bonds: I:K.31, I:V.34, I:V.34, I:R.63, I:T.64, I:G.65, I:K.66, I:T.67, I:T.67, I:V.68, I:E.145
- Salt bridges: I:R.63, I:R.63, I:R.63, I:K.66, J:R.189
ATP.11: 21 residues within 4Å:- Chain J: K.31, S.32, I.33, V.34, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, I.241, G.242, D.245
- Chain K: R.158, E.162, Q.185, R.189
- Ligands: MG.12
19 PLIP interactions:2 interactions with chain K, 17 interactions with chain J- Hydrogen bonds: K:R.158, J:K.31, J:K.31, J:V.34, J:V.34, J:R.63, J:T.64, J:G.65, J:K.66, J:T.67, J:T.67, J:V.68, J:E.145, J:E.145
- Salt bridges: K:R.189, J:R.63, J:R.63, J:K.66, J:K.66
ATP.13: 19 residues within 4Å:- Chain K: K.31, S.32, I.33, V.34, V.39, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, T.173, W.211, I.241, G.242, D.245
- Ligands: MG.14
13 PLIP interactions:13 interactions with chain K- Hydrogen bonds: K:K.31, K:K.31, K:V.34, K:V.34, K:R.63, K:T.64, K:G.65, K:K.66, K:T.67, K:V.68, K:E.145
- Salt bridges: K:K.66, K:K.66
- 7 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain E: T.67, E.145
- Ligands: ATP.1
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:T.67
MG.4: 4 residues within 4Å:- Chain F: T.67, E.145
- Chain G: R.189
- Ligands: ATP.3
No protein-ligand interaction detected (PLIP)MG.6: 2 residues within 4Å:- Chain G: T.67
- Ligands: ATP.5
1 PLIP interactions:1 interactions with chain G- Metal complexes: G:T.67
MG.8: 2 residues within 4Å:- Chain H: T.67
- Ligands: ATP.7
1 PLIP interactions:1 interactions with chain H- Metal complexes: H:T.67
MG.10: 3 residues within 4Å:- Chain I: R.63, T.67
- Ligands: ATP.9
1 PLIP interactions:1 interactions with chain I- Metal complexes: I:T.67
MG.12: 2 residues within 4Å:- Chain J: T.67
- Ligands: ATP.11
1 PLIP interactions:1 interactions with chain J- Metal complexes: J:T.67
MG.14: 2 residues within 4Å:- Chain K: T.67
- Ligands: ATP.13
1 PLIP interactions:1 interactions with chain K- Metal complexes: K:T.67
- 2 x ZN: ZINC ION(Non-covalent)
ZN.15: 5 residues within 4Å:- Chain L: C.133, N.135, C.136, C.151, C.154
4 PLIP interactions:4 interactions with chain L- Metal complexes: L:C.133, L:C.136, L:C.151, L:C.154
ZN.16: 4 residues within 4Å:- Chain L: C.100, C.103, C.122, H.125
4 PLIP interactions:4 interactions with chain L- Metal complexes: L:C.100, L:C.103, L:C.122, L:H.125
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schmitz, M. et al., Structural basis for the assembly of the type V CRISPR-associated transposon complex. Cell (2022)
- Release Date
- 2022-12-28
- Peptides
- ShCas12k: A
TnsC: EFGHIJK
TniQ (Homology model): L
30S ribosomal protein S15: M - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AE
EF
FG
GH
HI
IJ
JK
KL
QM
X
SMTL ID : 8bd5.1
Cas12k-sgRNA-dsDNA-S15-TniQ-TnsC transposon recruitment complex
ShCas12k
TnsC
Toggle Identical (EFGHIJK)TniQ (Homology model)
30S ribosomal protein S15
Related Entries With Identical Sequence
3j9y.1 | 3jcd.1 | 3jce.1 | 3jcj.1 | 3jcn.1 | 4v52.1 | 4v52.2 | 4v53.1 | 4v53.2 | 4v54.1 | 4v54.2 | 4v55.1 | 4v55.2 | 4v56.1 | 4v56.2 | 4v57.1 | 4v57.2 | 4v5y.1 | 4v5y.2 | 4v6c.1 | 4v6c.2 | 4v6d.1 | 4v6d.2 | 4v6e.1 | 4v6e.2 | 4v6y.1 | 4v6z.1 | 4v70.1 | 4v71.1 | 4v72.1 more...less...4v73.1 | 4v74.1 | 4v75.1 | 4v76.1 | 4v77.1 | 4v78.1 | 4v79.1 | 4v7a.1 | 4v7b.1 | 4v85.1 | 4v89.1 | 4v9c.1 | 4v9c.2 | 4v9o.1 | 4v9o.2 | 4v9o.3 | 4v9o.4 | 4v9p.1 | 4v9p.2 | 4v9p.3 | 4v9p.4 | 5afi.1 | 5iqr.1 | 5jte.1 | 5ju8.1 | 5kcr.1 | 5kcs.1 | 5kps.1 | 5kpv.1 | 5kpw.1 | 5kpx.1 | 5l3p.1 | 5mdv.1 | 5mdw.1 | 5mdy.1 | 5mdz.1 | 5me0.1 | 5me1.1 | 5nwy.1 | 5u9f.1 | 5u9g.1 | 6by1.1 | 6by1.2 | 6c4i.1 | 6dnc.1 | 6ogf.1 | 6ogg.1 | 6ogi.1 | 6om6.1 | 6q98.1 | 6szs.1 | 6tbv.1 | 6tc3.1 | 6vwl.1 | 6vwm.1 | 6vwn.1 | 6vyq.28 | 6vyr.28 | 6vys.28 | 6vyt.27 | 6vyu.28 | 6vyw.28 | 6vyx.28 | 6vyy.28 | 6vyz.28 | 6vz2.28 | 6vz5.28 | 6vzj.27 | 6w77.1 | 6w7m.1 | 6x6t.30 | 6x7f.30 | 6x7k.30 | 6x9q.30 | 6xdq.30 | 6xdr.29 | 6xgf.29 | 6xii.29 | 6xij.28 | 6ysr.1 | 6yss.1 | 6yst.1 | 6ysu.1 | 6ztj.14 | 6ztl.1 | 6ztm.1 | 6ztn.14 | 6zto.1 | 6ztp.1 | 6zu1.1 | 7afi.1 | 7afl.1 | 7afo.1 | 7bod.1 | 7boe.1 | 7bof.1 | 7bog.1 | 7boh.1 | 7boi.1 | 7cpj.1 | 7d6z.1 | 7d80.1 | 7k00.1 | 7m99.1 | 7m9a.1 | 7m9b.1 | 7m9c.1 | 7n1p.1 | 7n2c.1 | 7n2u.1 | 7n2v.1 | 7n30.1 | 7n31.1 | 7n6i.1 | 7nar.1 | 7nas.1 | 7nat.1 | 7nau.1 | 7nav.1 | 7nax.1 | 7nwt.1 | 7o19.1 | 7o1a.1 | 7o1c.1 | 7oiz.1 | 7oj0.1 | 7p3k.1 | 7pjs.1 | 7pjt.1 | 7pju.1 | 7pjv.1 | 7pjw.1 | 7pjx.1 | 7pjy.1 | 7pjz.1 | 7plh.1 | 7q4k.1 | 7qg8.1 | 7qgh.1 | 7qgn.1 | 7qgr.1 | 7s1g.1 | 7s1h.1 | 7s1i.1 | 7s1j.1 | 7s1k.1 | 7sa4.1 | 7svu.1 | 7svv.1 | 7ug7.1 | 7y7c.1 | 7y7d.1 | 7y7e.1 | 7y7f.1 | 7y7g.1 | 7y7h.1 | 8a3l.1 | 8akn.1 | 8am9.1 | 8aye.1 | 8b0x.1 | 8b7y.1 | 8bd4.1 | 8bd6.1 | 8bf7.1 | 8bge.1 | 8bgh.1 | 8bh4.1 | 8bhj.1 | 8bhl.1 | 8bhn.1 | 8bhp.1 | 8bil.1 | 8bim.1 | 8cai.1 | 8cep.1 | 8cgj.1 | 8cgr.1 | 8cgu.1 | 8ea3.1 | 8ea4.1 | 8eiu.1 | 8ekc.1 | 8emm.1 | 8eyq.1 | 8eyt.1 | 8fiz.1 | 8fto.1 | 8g6w.1 | 8g7p.1 | 8g7q.1 | 8g7r.1 | 8g7s.1 | 8hsp.1 | 8htz.1 | 8hu1.1 | 8ifb.1 | 8ifc.1 | 8jsh.1 | 8peg.1 | 8phj.1 | 8pkl.1 | 8pva.1 | 8qbt.1 | 8qoa.1 | 8r3v.31 | 8r3v.32 | 8rcl.31 | 8rcl.32 | 8rcm.31 | 8rcm.32 | 8rcs.31 | 8rcs.32 | 8rct.31 | 8rct.32 | 8syl.1