SMTL ID : 7m9c.1

ADP-AlF3 bound TnsC structure in open form

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-14-mer

Ligands

10 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)

ADP.1: 14 residues within 4Å: Chain B: S.32, I.33, V.34, S.62, R.63, T.64, G.65, K.66, T.67, V.68, I.241, G.242, D.245, R.249 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:V.34, B:V.34, B:R.63, B:T.64, B:T.64, B:G.65, B:K.66, B:T.67, B:T.67, B:T.67, B:V.68, B:R.249 Salt bridges: B:R.63, B:K.66 ADP.2: 14 residues within 4Å: Chain C: S.32, I.33, V.34, S.62, R.63, T.64, G.65, K.66, T.67, V.68, W.211, I.241, G.242, D.245 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:V.34, C:V.34, C:R.63, C:T.64, C:T.64, C:G.65, C:K.66, C:T.67, C:T.67, C:V.68 Salt bridges: C:K.66 pi-Stacking: C:W.211 ADP.3: 16 residues within 4Å: Chain D: S.32, I.33, V.34, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:V.34, D:V.34, D:E.61, D:S.62, D:R.63, D:R.63, D:T.64, D:G.65, D:K.66, D:E.145 Salt bridges: D:K.66 pi-Stacking: D:W.211 ADP.4: 15 residues within 4Å: Chain D: E.162 Chain E: K.31, S.32, I.33, V.34, R.63, T.64, G.65, K.66, T.67, V.68, W.211, I.241, G.242, D.245 15 PLIP interactions: 15 interactions with chain E Hydrogen bonds: E:K.31, E:V.34, E:V.34, E:R.63, E:T.64, E:T.64, E:T.64, E:G.65, E:K.66, E:T.67, E:T.67, E:T.67, E:V.68 Salt bridges: E:K.66 pi-Stacking: E:W.211 ADP.5: 15 residues within 4Å: Chain F: S.32, I.33, V.34, L.36, V.39, S.62, R.63, T.64, G.65, K.66, T.67, V.68, I.241, G.242, D.245 11 PLIP interactions: 11 interactions with chain F Hydrogen bonds: F:V.34, F:V.34, F:R.63, F:T.64, F:T.64, F:T.64, F:G.65, F:K.66, F:T.67, F:V.68, F:D.245 ADP.6: 15 residues within 4Å: Chain H: K.31, S.32, I.33, V.34, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, I.241, G.242, D.245 10 PLIP interactions: 10 interactions with chain H Hydrogen bonds: H:K.31, H:K.31, H:V.34, H:V.34, H:R.63, H:T.64, H:G.65, H:K.66, H:T.67 Salt bridges: H:K.66 ADP.7: 17 residues within 4Å: Chain I: K.31, S.32, I.33, V.34, L.36, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 14 PLIP interactions: 14 interactions with chain I Hydrogen bonds: I:K.31, I:V.34, I:V.34, I:R.63, I:T.64, I:G.65, I:K.66, I:T.67, I:T.67, I:T.67, I:E.145, I:D.245 Salt bridges: I:R.63, I:K.66 ADP.8: 15 residues within 4Å: Chain J: S.32, I.33, V.34, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, W.211, I.241, G.242, D.245 13 PLIP interactions: 13 interactions with chain J Hydrogen bonds: J:V.34, J:V.34, J:R.63, J:T.64, J:G.65, J:K.66, J:T.67, J:T.67, J:T.67, J:V.68, J:D.245 Salt bridges: J:K.66 pi-Stacking: J:W.211 ADP.9: 14 residues within 4Å: Chain K: S.32, I.33, V.34, S.62, R.63, T.64, G.65, K.66, T.67, V.68, I.241, G.242, D.245, E.246 13 PLIP interactions: 13 interactions with chain K Hydrogen bonds: K:V.34, K:V.34, K:R.63, K:T.64, K:G.65, K:K.66, K:T.67, K:T.67, K:T.67, K:V.68, K:E.246 Salt bridges: K:R.63, K:K.66 ADP.10: 16 residues within 4Å: Chain L: K.31, S.32, I.33, V.34, L.36, S.62, R.63, T.64, G.65, K.66, T.67, V.68, W.211, I.241, G.242, D.245 11 PLIP interactions: 11 interactions with chain L Hydrogen bonds: L:K.31, L:V.34, L:V.34, L:R.63, L:T.64, L:G.65, L:K.66, L:T.67, L:T.67 Salt bridges: L:K.66 pi-Stacking: L:W.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, J.U. et al., Structural basis for target site selection in RNA-guided DNA transposition systems. Science (2021)

Release Date

2021-07-28

Peptides

TnsC: ABCDEFGHIJKLOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

O
O

P
P

TnsC

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