- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-13-1-1-1-8-mer
- Ligands
- 15 x MG: MAGNESIUM ION(Non-covalent)
- 13 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)(Covalent)
ATP.2: 17 residues within 4Å:- Chain A: S.32, I.33, V.34, L.36, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, T.173, W.211, I.241, D.245
- Ligands: MG.1
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:V.34, A:V.34, A:R.63, A:T.64, A:G.65, A:K.66, A:T.67, A:T.67, A:V.68
- Salt bridges: A:R.63, A:K.66, A:K.66
- pi-Stacking: A:W.211
ATP.4: 17 residues within 4Å:- Chain A: Q.185, R.189
- Chain B: K.31, S.32, I.33, V.34, S.62, R.63, T.64, G.65, K.66, T.67, V.68, W.211, G.242, D.245
- Ligands: MG.3
15 PLIP interactions:13 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:V.34, B:V.34, B:G.65, B:G.65, B:K.66, B:T.67, B:V.68, B:D.245, A:Q.185
- Salt bridges: B:R.63, B:R.63, B:R.63, B:K.66, B:K.66, A:R.189
ATP.6: 20 residues within 4Å:- Chain B: Q.185, R.189
- Chain C: K.31, S.32, I.33, V.34, L.36, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, W.211, I.241, G.242, D.245
- Ligands: MG.5
17 PLIP interactions:14 interactions with chain C, 3 interactions with chain B- Hydrogen bonds: C:K.31, C:V.34, C:V.34, C:G.65, C:G.65, C:K.66, C:T.67, C:V.68, C:D.245, B:Q.185, B:Q.185, B:R.189
- Salt bridges: C:R.63, C:R.63, C:R.63, C:K.66, C:K.66
ATP.8: 20 residues within 4Å:- Chain C: Q.185, R.189
- Chain D: S.32, I.33, V.34, L.36, V.39, S.62, R.63, T.64, G.65, K.66, T.67, V.68, T.173, W.211, I.241, G.242, D.245
- Ligands: MG.7
17 PLIP interactions:13 interactions with chain D, 4 interactions with chain C- Hydrogen bonds: D:V.34, D:V.34, D:G.65, D:G.65, D:K.66, D:T.67, D:V.68, D:D.245, C:Q.185, C:Q.185, C:Q.185
- Salt bridges: D:R.63, D:R.63, D:R.63, D:K.66, D:K.66, C:R.189
ATP.10: 21 residues within 4Å:- Chain D: Q.185, R.189
- Chain E: K.31, S.32, I.33, V.34, L.36, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, T.173, W.211, I.241, G.242, D.245
- Ligands: MG.9
17 PLIP interactions:13 interactions with chain E, 4 interactions with chain D- Hydrogen bonds: E:K.31, E:V.34, E:V.34, E:G.65, E:K.66, E:T.67, E:V.68, E:D.245, D:Q.185, D:Q.185, D:Q.185, D:R.189
- Salt bridges: E:R.63, E:R.63, E:R.63, E:K.66, E:K.66
ATP.12: 20 residues within 4Å:- Chain E: Q.185, R.189
- Chain F: S.32, I.33, V.34, L.36, V.39, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, W.211, I.241, G.242, D.245
- Ligands: MG.11
15 PLIP interactions:12 interactions with chain F, 3 interactions with chain E- Hydrogen bonds: F:V.34, F:V.34, F:G.65, F:G.65, F:K.66, F:T.67, F:V.68, E:Q.185, E:Q.185
- Salt bridges: F:R.63, F:R.63, F:R.63, F:K.66, F:K.66, E:R.189
ATP.14: 19 residues within 4Å:- Chain F: R.189
- Chain G: K.31, S.32, I.33, V.34, L.36, V.39, S.62, R.63, T.64, G.65, K.66, T.67, V.68, W.211, I.241, G.242, D.245
- Ligands: MG.13
15 PLIP interactions:14 interactions with chain G, 1 interactions with chain F- Hydrogen bonds: G:V.34, G:V.34, G:G.65, G:G.65, G:K.66, G:T.67, G:V.68, G:D.245
- Salt bridges: G:R.63, G:R.63, G:R.63, G:K.66, G:K.66, F:R.189
- pi-Stacking: G:W.211
ATP.16: 17 residues within 4Å:- Chain G: R.189
- Chain H: K.31, S.32, I.33, V.34, S.62, R.63, T.64, G.65, K.66, T.67, V.68, D.144, W.211, G.242, D.245
- Ligands: MG.15
17 PLIP interactions:16 interactions with chain H, 1 interactions with chain G- Hydrogen bonds: H:K.31, H:V.34, H:V.34, H:T.64, H:G.65, H:G.65, H:K.66, H:T.67, H:T.67, H:V.68, H:D.245, H:D.245
- Salt bridges: H:R.63, H:R.63, H:K.66, H:K.66, G:R.189
ATP.18: 18 residues within 4Å:- Chain H: Q.185, R.189
- Chain I: K.31, S.32, I.33, V.34, S.62, R.63, G.65, K.66, T.67, V.68, D.144, W.211, I.241, G.242, D.245
- Ligands: MG.17
14 PLIP interactions:2 interactions with chain H, 12 interactions with chain I- Hydrogen bonds: H:Q.185, I:V.34, I:V.34, I:G.65, I:K.66, I:T.67, I:T.67, I:D.245, I:D.245
- Salt bridges: H:R.189, I:R.63, I:R.63, I:R.63, I:K.66
ATP.20: 18 residues within 4Å:- Chain I: Q.185, R.189
- Chain J: S.32, I.33, V.34, V.39, S.62, R.63, T.64, G.65, K.66, T.67, V.68, W.211, I.241, G.242, D.245
- Ligands: MG.19
14 PLIP interactions:2 interactions with chain I, 12 interactions with chain J- Hydrogen bonds: I:Q.185, J:V.34, J:V.34, J:G.65, J:K.66, J:T.67, J:V.68, J:D.245
- Salt bridges: I:R.189, J:R.63, J:R.63, J:R.63, J:K.66, J:K.66
ATP.22: 21 residues within 4Å:- Chain J: Q.185, R.189
- Chain K: K.31, S.32, I.33, V.34, L.36, V.39, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, W.211, I.241, G.242, D.245
- Ligands: MG.21
15 PLIP interactions:13 interactions with chain K, 2 interactions with chain J- Hydrogen bonds: K:V.34, K:V.34, K:T.64, K:G.65, K:K.66, K:T.67, K:V.68, K:D.245, J:Q.185
- Salt bridges: K:R.63, K:R.63, K:R.63, K:K.66, K:K.66, J:R.189
ATP.24: 20 residues within 4Å:- Chain K: Q.185, R.189
- Chain L: S.32, I.33, V.34, L.36, V.39, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, W.211, I.241, G.242, D.245
- Ligands: MG.23
17 PLIP interactions:14 interactions with chain L, 3 interactions with chain K- Hydrogen bonds: L:V.34, L:V.34, L:G.65, L:G.65, L:K.66, L:T.67, L:T.67, L:V.68, L:D.245, K:Q.185, K:Q.185
- Salt bridges: L:R.63, L:R.63, L:R.63, L:K.66, L:K.66, K:R.189
ATP.26: 21 residues within 4Å:- Chain L: Q.185, R.189
- Chain M: K.31, S.32, I.33, V.34, V.39, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, W.211, I.241, G.242, D.245, R.249
- Ligands: MG.25
15 PLIP interactions:13 interactions with chain M, 2 interactions with chain L- Hydrogen bonds: M:V.34, M:V.34, M:G.65, M:K.66, M:T.67, M:T.67, M:V.68, M:D.245, L:Q.185
- Salt bridges: M:R.63, M:R.63, M:R.63, M:K.66, M:K.66, L:R.189
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Park, J.U. et al., Structures of the holo CRISPR RNA-guided transposon integration complex. Nature (2023)
- Release Date
- 2022-11-30
- Peptides
- TnsC: ABCDEFGHIJKLM
Cas12k: N
TniQ: O
30S ribosomal protein S15: P
TnsB: QRSTUVWX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
OO
QP
SQ
WR
XS
YT
ZU
wV
xW
yX
z
SMTL ID : 8ea4.1
V-K CAST Transpososome from Scytonema hofmanni, minor configuration
TnsC
Toggle Identical (ABCDEFGHIJKLM)Cas12k
TniQ
30S ribosomal protein S15
TnsB
Toggle Identical (UVWX)Related Entries With Identical Sequence
3j9y.1 | 3jcd.1 | 3jce.1 | 3jcj.1 | 3jcn.1 | 4v52.1 | 4v52.2 | 4v53.1 | 4v53.2 | 4v54.1 | 4v54.2 | 4v55.1 | 4v55.2 | 4v56.1 | 4v56.2 | 4v57.1 | 4v57.2 | 4v5y.1 | 4v5y.2 | 4v6c.1 | 4v6c.2 | 4v6d.1 | 4v6d.2 | 4v6e.1 | 4v6e.2 | 4v6y.1 | 4v6z.1 | 4v70.1 | 4v71.1 | 4v72.1 more...less...4v73.1 | 4v74.1 | 4v75.1 | 4v76.1 | 4v77.1 | 4v78.1 | 4v79.1 | 4v7a.1 | 4v7b.1 | 4v85.1 | 4v89.1 | 4v9c.1 | 4v9c.2 | 4v9o.1 | 4v9o.2 | 4v9o.3 | 4v9o.4 | 4v9p.1 | 4v9p.2 | 4v9p.3 | 4v9p.4 | 5afi.1 | 5iqr.1 | 5jte.1 | 5ju8.1 | 5kcr.1 | 5kcs.1 | 5kps.1 | 5kpv.1 | 5kpw.1 | 5kpx.1 | 5l3p.1 | 5mdv.1 | 5mdw.1 | 5mdy.1 | 5mdz.1 | 5me0.1 | 5me1.1 | 5nwy.1 | 5u9f.1 | 5u9g.1 | 6by1.1 | 6by1.2 | 6c4i.1 | 6dnc.1 | 6ogf.1 | 6ogg.1 | 6ogi.1 | 6om6.1 | 6q98.1 | 6szs.1 | 6tbv.1 | 6tc3.1 | 6vwl.1 | 6vwm.1 | 6vwn.1 | 6vyx.28 | 6vzj.27 | 6w77.1 | 6w7m.1 | 6xdq.30 | 6ysr.1 | 6yss.1 | 6yst.1 | 6ysu.1 | 6ztj.14 | 6ztl.1 | 6ztm.1 | 6ztn.14 | 6zto.1 | 6ztp.1 | 6zu1.1 | 7afi.1 | 7afl.1 | 7afo.1 | 7bod.1 | 7boe.1 | 7bof.1 | 7bog.1 | 7boh.1 | 7boi.1 | 7cpj.1 | 7d6z.1 | 7d80.1 | 7k00.1 | 7m99.1 | 7m9a.1 | 7m9b.1 | 7m9c.1 | 7n1p.1 | 7n2c.1 | 7n2u.1 | 7n2v.1 | 7n30.1 | 7n31.1 | 7n3o.1 | 7n3p.1 | 7n6i.1 | 7nar.1 | 7nas.1 | 7nat.1 | 7nau.1 | 7nav.1 | 7nax.1 | 7nwt.1 | 7o19.1 | 7o1a.1 | 7o1c.1 | 7oiz.1 | 7oj0.1 | 7p3k.1 | 7pjs.1 | 7pjt.1 | 7pju.1 | 7pjv.1 | 7pjw.1 | 7pjx.1 | 7pjy.1 | 7pjz.1 | 7plh.1 | 7q4k.1 | 7qg8.1 | 7qgh.1 | 7qgn.1 | 7qgr.1 | 7s1g.1 | 7s1h.1 | 7s1i.1 | 7s1j.1 | 7s1k.1 | 7sa4.1 | 7svu.1 | 7svv.1 | 7svw.1 | 7ug7.1 | 7y7c.1 | 7y7d.1 | 7y7e.1 | 7y7f.1 | 7y7g.1 | 7y7h.1 | 8a3l.1 | 8akn.1 | 8am9.1 | 8aye.1 | 8b0x.1 | 8b7y.1 | 8bd4.1 | 8bd5.1 | 8bd6.1 | 8bf7.1 | 8bge.1 | 8bgh.1 | 8bh4.1 | 8bhj.1 | 8bhl.1 | 8bhn.1 | 8bhp.1 | 8bil.1 | 8bim.1 | 8cai.1 | 8cep.1 | 8cgj.1 | 8cgr.1 | 8cgu.1 | 8ea3.1 | 8eiu.1 | 8ekc.1 | 8emm.1 | 8eyq.1 | 8eyt.1 | 8fiz.1 | 8fto.1 | 8fzd.1 | 8fze.1 | 8fzf.1 | 8fzg.1 | 8fzh.1 | 8fzi.1 | 8fzj.1 | 8g6w.1 | 8g7p.1 | 8g7q.1 | 8g7r.1 | 8g7s.1 | 8hsp.1 | 8htz.1 | 8hu1.1 | 8ifb.1 | 8ifc.1 | 8jsh.1 | 8k3o.1 | 8k4e.1 | 8p16.1 | 8p17.1 | 8p18.1 | 8peg.1 | 8phj.1 | 8pkl.1 | 8pva.1 | 8q4f.1 | 8qbt.1 | 8qk7.1 | 8qoa.1 | 8r6c.1 | 8r8m.1 | 8rcm.31 | 8rcm.32 | 8rct.31 | 8rct.32 | 8syl.1 | 8urx.29 | 8vs9.1 | 8vsa.1 | 8yuo.1 | 8yup.1 | 8yuq.1 | 8yur.1 | 8yus.1 | 9ax7.1 | 9cg5.1 | 9cg6.1 | 9cg7.1 | 9fbv.1