SMTL ID : 7plh.1

Scytonema hofmannii TnsC bound to AMPPNP and DNA

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-heptamer

Ligands

7 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 22 residues within 4Å: Chain A: K.31, S.32, I.33, V.34, V.39, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 Chain B: R.158, Q.185, R.189 Ligands: MG.2 18 PLIP interactions: 2 interactions with chain B, 16 interactions with chain A Hydrogen bonds: B:R.158, B:R.189, A:K.31, A:K.31, A:V.34, A:V.34, A:R.63, A:R.63, A:T.64, A:G.65, A:K.66, A:K.66, A:K.66, A:T.67, A:T.67, A:T.67, A:V.68, A:D.245 ANP.3: 22 residues within 4Å: Chain B: K.31, S.32, I.33, V.34, V.39, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 Chain C: R.158, Q.185, R.189 Ligands: MG.4 18 PLIP interactions: 16 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:K.31, B:K.31, B:V.34, B:V.34, B:R.63, B:R.63, B:T.64, B:G.65, B:K.66, B:K.66, B:K.66, B:T.67, B:T.67, B:T.67, B:V.68, B:D.245, C:R.158, C:R.189 ANP.5: 22 residues within 4Å: Chain C: K.31, S.32, I.33, V.34, V.39, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 Chain D: R.158, Q.185, R.189 Ligands: MG.6 18 PLIP interactions: 16 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:K.31, C:K.31, C:V.34, C:V.34, C:R.63, C:R.63, C:T.64, C:G.65, C:K.66, C:K.66, C:K.66, C:T.67, C:T.67, C:T.67, C:V.68, C:D.245, D:R.158, D:R.189 ANP.7: 21 residues within 4Å: Chain D: K.31, S.32, I.33, V.34, V.39, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 Chain E: R.158, R.189 Ligands: MG.8 18 PLIP interactions: 16 interactions with chain D, 2 interactions with chain E Hydrogen bonds: D:K.31, D:K.31, D:V.34, D:V.34, D:R.63, D:R.63, D:T.64, D:G.65, D:K.66, D:K.66, D:K.66, D:T.67, D:T.67, D:T.67, D:V.68, D:D.245, E:R.158, E:R.189 ANP.9: 22 residues within 4Å: Chain E: K.31, S.32, I.33, V.34, V.39, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 Chain F: R.158, Q.185, R.189 Ligands: MG.10 18 PLIP interactions: 16 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:K.31, E:K.31, E:V.34, E:V.34, E:R.63, E:R.63, E:T.64, E:G.65, E:K.66, E:K.66, E:K.66, E:T.67, E:T.67, E:T.67, E:V.68, E:D.245, F:R.158, F:R.189 ANP.11: 22 residues within 4Å: Chain F: K.31, S.32, I.33, V.34, V.39, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 Chain G: R.158, Q.185, R.189 Ligands: MG.12 18 PLIP interactions: 16 interactions with chain F, 2 interactions with chain G Hydrogen bonds: F:K.31, F:K.31, F:V.34, F:V.34, F:R.63, F:R.63, F:T.64, F:G.65, F:K.66, F:K.66, F:K.66, F:T.67, F:T.67, F:T.67, F:V.68, F:D.245, G:R.158, G:R.189 ANP.13: 19 residues within 4Å: Chain G: K.31, S.32, I.33, V.34, V.39, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 Ligands: MG.14 16 PLIP interactions: 16 interactions with chain G Hydrogen bonds: G:K.31, G:K.31, G:V.34, G:V.34, G:R.63, G:R.63, G:T.64, G:G.65, G:K.66, G:K.66, G:K.66, G:T.67, G:T.67, G:T.67, G:V.68, G:D.245

7 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.67 Ligands: ANP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.67 MG.4: 2 residues within 4Å: Chain B: T.67 Ligands: ANP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.67 MG.6: 2 residues within 4Å: Chain C: T.67 Ligands: ANP.5 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.67 MG.8: 2 residues within 4Å: Chain D: T.67 Ligands: ANP.7 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:T.67 MG.10: 2 residues within 4Å: Chain E: T.67 Ligands: ANP.9 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:T.67 MG.12: 2 residues within 4Å: Chain F: T.67 Ligands: ANP.11 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:T.67 MG.14: 2 residues within 4Å: Chain G: T.67 Ligands: ANP.13 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:T.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Querques, I. et al., Target site selection and remodelling by type V CRISPR-transposon systems. Nature (2021)

Release Date

2021-12-01

Peptides

ShTnsC: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

ShTnsC

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