SMTL ID : 7svv.1

TnsBctd-TnsC complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-10-10-mer

Ligands

10 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Covalent)(Non-covalent)

ANP.1: 15 residues within 4Å: Chain C: K.31, S.32, I.33, V.34, S.62, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, D.245 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:K.31, C:K.31, C:V.34, C:V.34, C:G.65, C:K.66, C:K.66, C:K.66, C:T.67, C:V.68, C:E.145, C:D.245 pi-Stacking: C:W.211 ANP.3: 18 residues within 4Å: Chain C: R.189 Chain E: K.31, S.32, I.33, V.34, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 Ligands: MG.4 15 PLIP interactions: 14 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:K.31, E:K.31, E:V.34, E:V.34, E:T.64, E:G.65, E:G.65, E:K.66, E:K.66, E:K.66, E:T.67, E:V.68, E:E.145, E:D.245, C:R.189 ANP.5: 19 residues within 4Å: Chain E: R.189 Chain G: K.31, S.32, I.33, V.34, L.36, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 Ligands: MG.6 15 PLIP interactions: 13 interactions with chain G, 2 interactions with chain E Hydrogen bonds: G:K.31, G:K.31, G:V.34, G:V.34, G:T.64, G:G.65, G:G.65, G:K.66, G:K.66, G:K.66, G:T.67, G:E.145, G:D.245, E:R.189, E:R.189 ANP.7: 16 residues within 4Å: Chain G: R.189 Chain I: K.31, S.32, I.33, V.34, S.62, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, D.245 Ligands: MG.8 12 PLIP interactions: 11 interactions with chain I, 1 interactions with chain G Hydrogen bonds: I:K.31, I:K.31, I:V.34, I:G.65, I:K.66, I:K.66, I:T.67, I:V.68, I:E.145, I:D.245, G:R.189 pi-Stacking: I:W.211 ANP.9: 17 residues within 4Å: Chain I: R.189 Chain K: K.31, S.32, I.33, V.34, L.36, S.62, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 Ligands: MG.10 14 PLIP interactions: 12 interactions with chain K, 2 interactions with chain I Hydrogen bonds: K:K.31, K:K.31, K:V.34, K:V.34, K:G.65, K:K.66, K:K.66, K:T.67, K:T.67, K:V.68, K:E.145, K:D.245, I:R.189, I:R.189 ANP.11: 17 residues within 4Å: Chain K: R.189 Chain M: K.31, S.32, I.33, V.34, L.36, S.62, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 Ligands: MG.12 14 PLIP interactions: 12 interactions with chain M, 2 interactions with chain K Hydrogen bonds: M:K.31, M:K.31, M:V.34, M:V.34, M:G.65, M:K.66, M:K.66, M:T.67, M:T.67, M:V.68, M:E.145, M:D.245, K:R.189, K:R.189 ANP.13: 18 residues within 4Å: Chain M: R.189 Chain O: K.31, S.32, I.33, V.34, L.36, S.62, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 Ligands: MG.14 12 PLIP interactions: 11 interactions with chain O, 1 interactions with chain M Hydrogen bonds: O:K.31, O:K.31, O:V.34, O:V.34, O:G.65, O:K.66, O:K.66, O:T.67, O:V.68, O:E.145, O:D.245, M:R.189 ANP.15: 17 residues within 4Å: Chain O: R.189 Chain Q: K.31, S.32, I.33, V.34, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, D.245 Ligands: MG.16 15 PLIP interactions: 14 interactions with chain Q, 1 interactions with chain O Hydrogen bonds: Q:K.31, Q:K.31, Q:V.34, Q:V.34, Q:G.65, Q:K.66, Q:K.66, Q:K.66, Q:T.67, Q:T.67, Q:V.68, Q:E.145, Q:D.245, O:R.189 Salt bridges: Q:R.63 ANP.17: 17 residues within 4Å: Chain Q: R.189 Chain S: K.31, S.32, I.33, V.34, S.62, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 Ligands: MG.18 16 PLIP interactions: 15 interactions with chain S, 1 interactions with chain Q Hydrogen bonds: S:K.31, S:K.31, S:V.34, S:V.34, S:T.64, S:G.65, S:G.65, S:K.66, S:K.66, S:K.66, S:T.67, S:V.68, S:E.145, S:D.245, Q:R.189 pi-Stacking: S:W.211 ANP.19: 18 residues within 4Å: Chain S: R.189 Chain U: K.31, S.32, I.33, V.34, L.36, S.62, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, G.242, D.245 Ligands: MG.20 15 PLIP interactions: 14 interactions with chain U, 1 interactions with chain S Hydrogen bonds: U:K.31, U:K.31, U:V.34, U:V.34, U:R.63, U:G.65, U:K.66, U:K.66, U:K.66, U:T.67, U:V.68, U:E.145, U:D.245, S:R.189 Salt bridges: U:R.63

10 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain C: T.67 Ligands: ANP.1 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.67 MG.4: 2 residues within 4Å: Chain E: T.67 Ligands: ANP.3 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:T.67 MG.6: 2 residues within 4Å: Chain G: T.67 Ligands: ANP.5 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:T.67 MG.8: 2 residues within 4Å: Chain I: T.67 Ligands: ANP.7 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:T.67 MG.10: 2 residues within 4Å: Chain K: T.67 Ligands: ANP.9 1 PLIP interactions: 1 interactions with chain K Metal complexes: K:T.67 MG.12: 2 residues within 4Å: Chain M: T.67 Ligands: ANP.11 1 PLIP interactions: 1 interactions with chain M Metal complexes: M:T.67 MG.14: 2 residues within 4Å: Chain O: T.67 Ligands: ANP.13 1 PLIP interactions: 1 interactions with chain O Metal complexes: O:T.67 MG.16: 2 residues within 4Å: Chain Q: T.67 Ligands: ANP.15 1 PLIP interactions: 1 interactions with chain Q Metal complexes: Q:T.67 MG.18: 2 residues within 4Å: Chain S: T.67 Ligands: ANP.17 1 PLIP interactions: 1 interactions with chain S Metal complexes: S:T.67 MG.20: 2 residues within 4Å: Chain U: T.67 Ligands: ANP.19 1 PLIP interactions: 1 interactions with chain U Metal complexes: U:T.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, J.U. et al., Mechanistic details of CRISPR-associated transposon recruitment and integration revealed by cryo-EM. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-08-10

Peptides

TnsC filament: CEGIKMOQSU
TnsBctd: DFHJLNPRTV

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

E
B

G
C

I
D

K
E

M
F

O
G

Q
H

S
I

U
J

D
a

F
b

H
c

J
d

L
e

N
f

P
g

R
h

T
i

V
j

TnsC filament

TnsBctd

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