SMTL ID : 7n6i.1

ATP-bound TnsC-TniQ complex from ShCAST system

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-8-mer

Ligands

7 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)(Covalent)

ATP.1: 16 residues within 4Å: Chain C: Q.185, R.189 Chain D: S.32, I.33, V.34, S.62, R.63, G.65, K.66, T.67, V.68, W.211, I.241, G.242, D.245 Ligands: MG.2 14 PLIP interactions: 12 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:V.34, D:V.34, D:S.62, D:R.63, D:R.63, D:G.65, D:K.66, D:T.67, D:T.67, D:V.68, C:Q.185, C:R.189 Salt bridges: D:K.66, D:K.66 ATP.3: 17 residues within 4Å: Chain D: Q.185, R.189 Chain E: S.32, I.33, V.34, L.36, E.61, S.62, R.63, G.65, K.66, T.67, V.68, W.211, I.241, D.245 Ligands: MG.4 14 PLIP interactions: 2 interactions with chain D, 12 interactions with chain E Hydrogen bonds: D:Q.185, E:V.34, E:V.34, E:S.62, E:R.63, E:R.63, E:G.65, E:G.65, E:K.66, E:T.67, E:V.68 Salt bridges: D:R.189, E:K.66, E:K.66 ATP.5: 20 residues within 4Å: Chain E: Q.185, R.189 Chain F: K.31, S.32, I.33, V.34, L.36, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, W.211, I.241, D.245 Ligands: MG.6 15 PLIP interactions: 13 interactions with chain F, 2 interactions with chain E Hydrogen bonds: F:V.34, F:V.34, F:R.63, F:R.63, F:T.64, F:T.64, F:G.65, F:K.66, F:T.67, F:V.68, F:E.145, E:Q.185, E:R.189 Salt bridges: F:K.66, F:K.66 ATP.7: 17 residues within 4Å: Chain F: Q.185, R.189 Chain G: K.31, S.32, I.33, V.34, S.62, R.63, T.64, G.65, K.66, T.67, V.68, W.211, I.241, D.245 Ligands: MG.8 16 PLIP interactions: 2 interactions with chain F, 14 interactions with chain G Hydrogen bonds: F:Q.185, F:R.189, G:K.31, G:K.31, G:V.34, G:V.34, G:S.62, G:R.63, G:T.64, G:G.65, G:G.65, G:K.66, G:T.67, G:V.68 Salt bridges: G:K.66, G:K.66 ATP.9: 18 residues within 4Å: Chain G: Q.185 Chain H: K.31, S.32, I.33, V.34, L.36, S.62, R.63, T.64, G.65, K.66, T.67, V.68, W.211, I.241, G.242, D.245 Ligands: MG.10 17 PLIP interactions: 16 interactions with chain H, 1 interactions with chain G Hydrogen bonds: H:K.31, H:K.31, H:V.34, H:V.34, H:S.62, H:R.63, H:T.64, H:T.64, H:G.65, H:K.66, H:T.67, H:T.67, H:V.68, G:Q.185 Salt bridges: H:R.63, H:K.66, H:K.66 ATP.11: 17 residues within 4Å: Chain H: Q.185, R.189 Chain I: K.31, S.32, I.33, V.34, S.62, R.63, G.65, K.66, T.67, V.68, W.211, I.241, G.242, D.245 Ligands: MG.12 14 PLIP interactions: 12 interactions with chain I, 2 interactions with chain H Hydrogen bonds: I:K.31, I:K.31, I:V.34, I:V.34, I:R.63, I:G.65, I:K.66, I:T.67, I:V.68, H:Q.185, H:R.189 Salt bridges: I:R.63, I:K.66, I:K.66 ATP.13: 18 residues within 4Å: Chain I: Q.185 Chain J: S.32, I.33, V.34, L.36, E.61, S.62, R.63, T.64, G.65, K.66, T.67, V.68, E.145, I.241, G.242, D.245 Ligands: MG.14 15 PLIP interactions: 13 interactions with chain J, 2 interactions with chain I Hydrogen bonds: J:V.34, J:V.34, J:E.61, J:R.63, J:R.63, J:R.63, J:T.64, J:G.65, J:K.66, J:T.67, I:Q.185, I:R.189 Salt bridges: J:R.63, J:K.66, J:K.66

7 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain D: T.67 Ligands: ATP.1 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:T.67 MG.4: 3 residues within 4Å: Chain E: T.67, E.145 Ligands: ATP.3 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:T.67 MG.6: 3 residues within 4Å: Chain F: T.67, E.145 Ligands: ATP.5 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:T.67 MG.8: 2 residues within 4Å: Chain G: T.67 Ligands: ATP.7 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:T.67 MG.10: 2 residues within 4Å: Chain H: T.67 Ligands: ATP.9 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:T.67 MG.12: 4 residues within 4Å: Chain H: E.162 Chain I: T.67, D.144 Ligands: ATP.11 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:T.67 MG.14: 2 residues within 4Å: Chain J: T.67 Ligands: ATP.13 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:T.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, J.U. et al., Structural basis for target site selection in RNA-guided DNA transposition systems. Science (2021)

Release Date

2021-07-28

Peptides

TniQ (Homology model): AB
TnsC: CDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

TniQ (Homology model)

TnsC

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