SMTL ID : 7mic.1

Maize rayado fino virus protease in complex with Ubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

hetero-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: S.20, G.21, P.22, R.44 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.44 GOL.3: 3 residues within 4Å: Chain B: E.16, K.29, D.32 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.29, B:D.32

1 x 3CN: 3-AMINOPROPANE(Covalent)

3CN.2: 11 residues within 4Å: Chain A: R.58, A.59, A.60, C.61, L.62, L.98, G.99, G.143, H.144, F.145 Chain B: G.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patel, A. et al., The endopeptidase of the maize-affecting Marafivirus type member maize rayado fino virus doubles as a deubiquitinase. J.Biol.Chem. (2021)

Release Date

2021-07-21

Peptides

RNA replication protein: A
Ubiquitin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RNA replication protein

Ubiquitin

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