SMTL ID : 8q00.1 (1 other biounit)

TssM-Ub-PA complex - A USP-like DUB from B. pseudomallei (193-430) reacted with Ub-PA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 8 residues within 4Å: Chain A: L.187, Q.191, L.197, D.199, F.224, N.226 Chain B: Q.49, E.51 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.187, A:F.224 Hydrogen bonds: A:Q.191, A:N.226, B:Q.49 Water bridges: A:L.197, A:D.199

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: R.41, A.42, D.43, E.76 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.41, A:D.43, A:R.74, A:R.74, A:E.76

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain A: R.173, T.175, V.178, P.179, D.180 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hermanns, T. et al., The structural basis for deubiquitination by the fingerless USP-type effector TssM. Life Sci Alliance (2024)

Release Date

2023-12-13

Peptides

TssM: A
Polyubiquitin-B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TssM

Polyubiquitin-B

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