SMTL ID : 9c5e.1

Covalent Complex Between Parkin Catalytic (Rcat) Domain and Ubiquitin

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

hetero-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.55, C.58, C.66, H.70 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.55, A:C.58, A:C.66, A:H.70 ZN.2: 7 residues within 4Å: Chain A: C.27, K.29, C.30, C.45, R.47, C.50, F.52 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.27, A:C.30, A:C.45, A:C.50

1 x 4LJ: 1.7.6 3-bromanylpropan-1-amine(Covalent)

4LJ.3: 6 residues within 4Å: Chain A: C.40, H.42, W.71, F.72 Chain B: R.74, G.75 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.74 Hydrophobic interactions: A:H.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Connelly, E.M. et al., Capturing the catalytic intermediates of parkin ubiquitination. Proc.Natl.Acad.Sci.USA (2024)

Release Date

2024-08-14

Peptides

E3 ubiquitin-protein ligase parkin: A
Ubiquitin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase parkin

Ubiquitin

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