SMTL ID : 7oje.2 (1 other biounit)

Crystal structure of the covalent complex between Tribolium castaneum deubiquitinase ZUP and Ubiquitin-PA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 6 residues within 4Å: Chain A: R.331, R.334, K.335, S.336, A.339 Ligands: NA.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.336 Salt bridges: A:R.331, A:K.335

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.10, C.13, H.29, H.33 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.10, A:C.13, A:H.29, A:H.33

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain A: R.331, L.332, R.334, K.335 Ligands: CIT.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.334, A:K.335

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: Q.215, L.216 Chain B: L.8, V.70, L.71, R.74 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.69, B:L.71, B:R.74, B:R.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hermanns, T. et al., A structural basis for the diverse linkage specificities within the ZUFSP deubiquitinase family. Nat Commun (2022)

Release Date

2022-02-02

Peptides

Lys-63-specific deubiquitinase ZUFSP: A
Polyubiquitin-B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Lys-63-specific deubiquitinase ZUFSP

Polyubiquitin-B

Related Entries With Identical Sequence