SMTL ID : 7odk.1 (1 other biounit)

Plant peptide hormone receptor H1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 10 residues within 4Å: Chain A: H.125, D.127, V.149, S.151, M.173, N.175, V.198, W.200, D.222 Ligands: EDO.8 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.198, A:D.222

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 3 residues within 4Å: Chain A: G.142, K.143, N.167 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 6 residues within 4Å: Chain A: S.537, Q.556, L.557, N.558, Y.561, N.579 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.561 NAG-NAG.4: 5 residues within 4Å: Chain A: S.58, N.60, Y.81, N.82 Ligands: EDO.10 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain A: Y.394, N.418, N.442 Ligands: EDO.16 No protein-ligand interaction detected (PLIP)

1 x NAG- FUC- NAG- FUC: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-FUC-NAG-FUC.6: 6 residues within 4Å: Chain A: D.20, A.62, G.63, S.84, N.86, L.108 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.108

1 x NAG- FUC- NAG: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-FUC-NAG.7: 3 residues within 4Å: Chain A: P.188, E.189, N.192 No protein-ligand interaction detected (PLIP)

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 5 residues within 4Å: Chain A: W.200, D.222, D.224, Q.246 Ligands: NAG-NAG-BMA.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.222, A:Q.246 EDO.9: 4 residues within 4Å: Chain A: Y.250, D.272, S.274, Y.297 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.272, A:S.274, A:N.295, A:Y.297 EDO.10: 6 residues within 4Å: Chain A: S.58, N.60, N.82, N.83, S.84 Ligands: NAG-NAG.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.60, A:S.84 EDO.11: 4 residues within 4Å: Chain A: L.227, N.228, N.251 Ligands: NAG.19 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.251 Water bridges: A:D.229 EDO.12: 6 residues within 4Å: Chain A: F.321, D.343, S.345, E.346, L.367, I.369 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.345, A:E.346, A:R.391 EDO.13: 5 residues within 4Å: Chain A: Y.178, N.179, P.180, E.203, H.205 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.203 EDO.14: 5 residues within 4Å: Chain A: D.33, A.34, S.35, R.38 Ligands: EDO.17 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.34, A:S.35 EDO.15: 4 residues within 4Å: Chain A: L.89, E.112, L.113, P.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.112 Water bridges: A:Q.115 EDO.16: 3 residues within 4Å: Chain A: N.442, H.489 Ligands: NAG-NAG.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.442, A:N.442 EDO.17: 4 residues within 4Å: Chain A: N.30, N.32, D.33 Ligands: EDO.14 No protein-ligand interaction detected (PLIP) EDO.18: 4 residues within 4Å: Chain A: V.245, S.267, R.269, E.292 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.292, A:E.292

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.19: 4 residues within 4Å: Chain A: L.227, N.251, M.275 Ligands: EDO.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.251 NAG.20: 3 residues within 4Å: Chain A: H.410, N.412, N.434 No protein-ligand interaction detected (PLIP) NAG.21: 3 residues within 4Å: Chain A: T.110, N.132, L.156 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.132

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.22: 2 residues within 4Å: Chain A: R.385, H.410 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.385, A:H.410

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roman, A.O. et al., HSL1 and BAM1/2 impact epidermal cell development by sensing distinct signaling peptides. Nat Commun (2022)

Release Date

2022-02-16

Peptides

Receptor-like protein kinase HSL1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Receptor-like protein kinase HSL1

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