SMTL ID : 7odv.2 (1 other biounit)

Plant peptide hormone receptor complex H1LS1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

hetero-1-1-1-mer

Ligands

7 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: T.388, H.410, N.412, N.434 Chain B: Q.29 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.29 NAG-NAG.2: 3 residues within 4Å: Chain A: Y.394, N.418, N.442 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain A: G.142, K.143, N.167 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.143, A:K.143 NAG-NAG.4: 5 residues within 4Å: Chain A: S.58, N.60, Y.81, N.82 Chain C: Y.1 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain A: S.18, D.20, A.62, N.86 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.20 NAG-NAG.8: 4 residues within 4Å: Chain B: L.107, N.131, N.155, N.178 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 4 residues within 4Å: Chain B: M.140, T.143, N.144, N.165 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.6: 10 residues within 4Å: Chain A: H.125, D.127, V.149, S.151, M.173, N.175, V.198, W.200, D.222 Chain C: S.7 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.198

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.7: 4 residues within 4Å: Chain A: N.167, P.188, E.189, N.192 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.188 Hydrogen bonds: A:N.192

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 6 residues within 4Å: Chain A: L.227, D.229, N.251, M.275 Chain C: R.12 Ligands: NA.15 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.229, A:N.251 Water bridges: A:D.229 NAG.11: 5 residues within 4Å: Chain A: L.557, N.558, Y.561, N.579, S.580 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.537, A:N.579 NAG.12: 4 residues within 4Å: Chain A: T.110, N.132, S.134, L.156 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.134, A:S.134 Water bridges: A:N.132, A:N.132 NAG.16: 1 residues within 4Å: Chain B: N.85 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.85

2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.17: 4 residues within 4Å: Chain B: C.39, T.40, W.41, V.44 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:C.39, B:W.41, B:V.44, H2O.5, H2O.8

2 x NA: SODIUM ION(Non-functional Binders)

NA.14: 4 residues within 4Å: Chain A: C.37, R.38, W.39, V.42 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.37 Water bridges: A:G.41 NA.15: 4 residues within 4Å: Chain A: N.228, D.229, N.251 Ligands: NAG.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.229 Water bridges: A:D.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roman, A.O. et al., HSL1 and BAM1/2 impact epidermal cell development by sensing distinct signaling peptides. Nat Commun (2022)

Release Date

2022-02-16

Peptides

Receptor-like protein kinase HSL1: A
Somatic embryogenesis receptor kinase 1: B
Protein IDA: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
DDD

B
EEE

C
FFF

Receptor-like protein kinase HSL1

Somatic embryogenesis receptor kinase 1

Protein IDA

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