SMTL ID : 7ogu.1 (3 other biounits)

Plant peptide hormone receptor complex H1C9S1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.87 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: L.227, D.229, N.251, M.275 Chain C: N.8, L.10 Ligands: NA.11 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 5 residues within 4Å: Chain A: G.142, K.143, F.164, N.167 Ligands: NA.12 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 2 residues within 4Å: Chain A: D.20, N.86 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.20 NAG-NAG.7: 3 residues within 4Å: Chain A: Y.394, N.418, N.442 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 11 residues within 4Å: Chain A: H.125, D.127, V.149, S.151, M.173, N.175, V.198, W.200, D.222 Chain C: S.5 Ligands: MAN.9 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:D.222 NAG-NAG-BMA-MAN.3: 3 residues within 4Å: Chain A: H.410, N.412, N.434 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.5: 2 residues within 4Å: Chain A: N.192, Q.216 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Q.216

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.8: 3 residues within 4Å: Chain B: T.143, N.144, N.165 No protein-ligand interaction detected (PLIP)

1 x MAN: alpha-D-mannopyranose(Non-functional Binders)

MAN.9: 1 residues within 4Å: Ligands: NAG-NAG-BMA-MAN.2 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 5 residues within 4Å: Chain A: L.557, N.558, Y.561, N.579, S.580 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.579 NAG.13: 4 residues within 4Å: Chain B: L.107, N.131, N.155, N.178 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.107 Hydrogen bonds: B:N.178 NAG.14: 1 residues within 4Å: Chain B: N.85 No protein-ligand interaction detected (PLIP)

3 x NA: SODIUM ION(Non-functional Binders)

NA.11: 4 residues within 4Å: Chain A: N.228, D.229, N.251 Ligands: NAG-NAG.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.228 NA.12: 3 residues within 4Å: Chain A: N.167, S.169 Ligands: NAG-NAG.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.167, A:S.169 NA.15: 3 residues within 4Å: Chain B: C.39, W.41, V.44 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:W.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roman, A.O. et al., HSL1 and BAM1/2 impact epidermal cell development by sensing distinct signaling peptides. Nat Commun (2022)

Release Date

2022-02-16

Peptides

Receptor-like protein kinase HSL1: A
Somatic embryogenesis receptor kinase 1: B
CLAVATA3/ESR (CLE)-related protein 9: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

C
CCC

Receptor-like protein kinase HSL1

Somatic embryogenesis receptor kinase 1

CLAVATA3/ESR (CLE)-related protein 9

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