SMTL ID : 7ogq.1

Plant peptide hormone receptor H1I2S1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- FUC- FUC: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-FUC-FUC.1: 5 residues within 4Å: Chain A: D.20, A.62, G.63, N.86, L.108 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.108 Hydrogen bonds: A:D.20

3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.2: 5 residues within 4Å: Chain A: S.58, N.60, Y.81, N.82 Chain C: Y.1 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.4: 11 residues within 4Å: Chain A: H.125, D.127, V.149, S.151, M.173, N.175, V.198, W.200, V.221, D.222 Chain C: S.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.198, A:V.221 NAG-NAG-BMA-MAN-MAN.8: 5 residues within 4Å: Chain B: M.140, S.141, N.144 Ligands: NAG-NAG.9, NAG-NAG.9 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.3: 3 residues within 4Å: Chain A: G.142, K.143, N.167 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.5: 5 residues within 4Å: Chain A: T.388, H.410, N.412, N.434 Chain B: Q.29 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.29 NAG-NAG-BMA-MAN.7: 3 residues within 4Å: Chain A: Y.394, N.418, N.442 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.6: 4 residues within 4Å: Chain A: N.167, P.188, E.189, N.192 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.167

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.9: 7 residues within 4Å: Chain B: M.140, T.143, N.144, N.165, G.166 Ligands: NAG-NAG-BMA-MAN-MAN.8, NAG-NAG-BMA-MAN-MAN.8 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 4 residues within 4Å: Chain B: L.107, N.131, N.155, N.178 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.11: 3 residues within 4Å: Chain A: L.227, N.251, M.275 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.251 NAG.12: 4 residues within 4Å: Chain A: T.110, N.132, S.134, L.156 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.134, A:S.134 Water bridges: A:N.132, A:N.132 NAG.18: 5 residues within 4Å: Chain B: S.92, N.93, N.96, S.117, K.120 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.96, B:K.120, B:K.120

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.13: 2 residues within 4Å: Chain A: S.426, K.427 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.427 SO4.14: 3 residues within 4Å: Chain A: R.385, P.409, H.410 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.385, A:H.410 SO4.15: 3 residues within 4Å: Chain A: H.233, T.255, G.256 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.255, A:G.256 Salt bridges: A:H.233 SO4.16: 3 residues within 4Å: Chain A: R.185, G.208, Q.209 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.209, A:Q.209 SO4.17: 8 residues within 4Å: Chain A: N.555, Q.556, L.557, M.576, Y.577, S.580 Chain B: R.125, F.126 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:L.557, A:M.576, A:S.580 Salt bridges: B:R.125 SO4.19: 4 residues within 4Å: Chain B: Q.77, Y.78, V.101, R.125 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.77, B:R.125 Water bridges: B:Y.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roman, A.O. et al., HSL1 and BAM1/2 impact epidermal cell development by sensing distinct signaling peptides. Nat Commun (2022)

Release Date

2022-02-16

Peptides

Receptor-like protein kinase HSL1: A
Somatic embryogenesis receptor kinase 1: B
Protein IDA-LIKE 2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

C
CCC

Receptor-like protein kinase HSL1

Somatic embryogenesis receptor kinase 1

Protein IDA-LIKE 2

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