SMTL ID : 7odk.2 (1 other biounit)

Plant peptide hormone receptor H1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 10 residues within 4Å: Chain A: H.125, D.127, V.149, S.151, M.173, N.175, V.198, W.200, D.222 Ligands: EDO.11 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.198, A:D.222

5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 3 residues within 4Å: Chain A: G.142, K.143, N.167 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 7 residues within 4Å: Chain A: S.537, L.557, N.558, S.560, Y.561, N.579, S.580 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.561 NAG-NAG.4: 4 residues within 4Å: Chain A: Y.394, N.418, N.442 Ligands: EDO.15 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 3 residues within 4Å: Chain A: P.188, E.189, N.192 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 4 residues within 4Å: Chain A: S.58, Y.81, N.82 Ligands: EDO.9 No protein-ligand interaction detected (PLIP)

1 x NAG- FUC- NAG- FUC: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-FUC-NAG-FUC.5: 6 residues within 4Å: Chain A: D.20, A.62, G.63, S.84, N.86, L.108 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.108

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 3 residues within 4Å: Chain A: Y.250, D.272, Y.297 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.272 Water bridges: A:D.272 EDO.9: 6 residues within 4Å: Chain A: S.58, N.60, N.82, N.83, S.84 Ligands: NAG-NAG.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.60, A:S.84 EDO.10: 5 residues within 4Å: Chain A: N.131, N.132, Y.154, N.155 Ligands: NAG.20 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.154 EDO.11: 5 residues within 4Å: Chain A: W.200, D.222, D.224, Q.246 Ligands: NAG-NAG-BMA.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.222, A:D.224, A:Q.246 EDO.12: 4 residues within 4Å: Chain A: V.221, N.243, V.245, S.267 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.267 EDO.13: 5 residues within 4Å: Chain A: D.343, S.345, E.346, I.369, R.391 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.343, A:S.345, A:E.346, A:R.391 Water bridges: A:R.391 EDO.14: 5 residues within 4Å: Chain A: Y.178, N.179, P.180, E.203, H.205 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.178 EDO.15: 3 residues within 4Å: Chain A: N.442, H.489 Ligands: NAG-NAG.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.442, A:H.489 EDO.16: 4 residues within 4Å: Chain A: R.269, E.292, N.314 Ligands: EDO.17 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.269, A:E.292, A:E.292 EDO.17: 5 residues within 4Å: Chain A: V.245, S.267, R.269, E.292 Ligands: EDO.16 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.292

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.18: 3 residues within 4Å: Chain A: L.227, N.251, M.275 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.251 NAG.19: 4 residues within 4Å: Chain A: T.388, H.410, N.412, N.434 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.412 NAG.20: 4 residues within 4Å: Chain A: T.110, N.132, L.156 Ligands: EDO.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.132

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.21: 2 residues within 4Å: Chain A: R.385, H.410 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.385, A:H.410

1 x NA: SODIUM ION(Non-functional Binders)

NA.22: 4 residues within 4Å: Chain A: S.24, Y.25, S.27, S.28 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.24, A:S.27, A:S.28, A:S.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roman, A.O. et al., HSL1 and BAM1/2 impact epidermal cell development by sensing distinct signaling peptides. Nat Commun (2022)

Release Date

2022-02-16

Peptides

Receptor-like protein kinase HSL1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
BBB

Receptor-like protein kinase HSL1

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