- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-8-1-1-1-1-4-2-2-1-1-4-1-4-4-4-4-mer
- Ligands
- 13 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 14 x MG: MAGNESIUM ION(Non-functional Binders)
MG.2: 1 residues within 4Å:- Ligands: ADP.1
No protein-ligand interaction detected (PLIP)MG.4: 1 residues within 4Å:- Ligands: ADP.3
No protein-ligand interaction detected (PLIP)MG.6: 1 residues within 4Å:- Ligands: ADP.5
No protein-ligand interaction detected (PLIP)MG.8: 1 residues within 4Å:- Ligands: ADP.7
No protein-ligand interaction detected (PLIP)MG.10: 1 residues within 4Å:- Ligands: ADP.9
No protein-ligand interaction detected (PLIP)MG.11: 1 residues within 4Å:- Ligands: ADP.12
No protein-ligand interaction detected (PLIP)MG.14: 1 residues within 4Å:- Ligands: ADP.13
No protein-ligand interaction detected (PLIP)MG.16: 1 residues within 4Å:- Ligands: ADP.15
No protein-ligand interaction detected (PLIP)MG.18: 1 residues within 4Å:- Ligands: ADP.17
No protein-ligand interaction detected (PLIP)MG.20: 1 residues within 4Å:- Ligands: ATP.19
No protein-ligand interaction detected (PLIP)MG.26: 1 residues within 4Å:- Ligands: ATP.25
No protein-ligand interaction detected (PLIP)MG.32: 1 residues within 4Å:- Ligands: ATP.30
No protein-ligand interaction detected (PLIP)MG.36: 1 residues within 4Å:- Ligands: ATP.35
No protein-ligand interaction detected (PLIP)MG.41: 1 residues within 4Å:- Ligands: ATP.40
No protein-ligand interaction detected (PLIP)- 5 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.19: 12 residues within 4Å:- Chain J: G.21, E.22, A.23, F.24, G.142, Y.143, R.144, G.307, G.308, T.309, M.311
- Ligands: MG.20
8 PLIP interactions:8 interactions with chain J- Hydrogen bonds: J:E.22, J:A.23, J:F.24, J:F.24, J:Y.143, J:R.144, J:G.308, J:T.309
ATP.25: 12 residues within 4Å:- Chain Z: L.2191, T.2192, S.2226, G.2227, S.2228, G.2229, K.2230, S.2231, M.2232, M.2373, R.2726
- Ligands: MG.26
9 PLIP interactions:9 interactions with chain Z- Hydrogen bonds: Z:T.2192, Z:T.2192, Z:G.2227, Z:S.2228, Z:G.2229, Z:K.2230, Z:S.2231, Z:M.2232, Z:R.2726
ATP.30: 11 residues within 4Å:- Chain 0: L.2191, T.2192, S.2226, G.2227, S.2228, G.2229, K.2230, S.2231, M.2232, M.2373
- Ligands: MG.32
8 PLIP interactions:8 interactions with chain 0- Hydrogen bonds: 0:T.2192, 0:T.2192, 0:G.2227, 0:S.2228, 0:G.2229, 0:K.2230, 0:S.2231, 0:M.2232
ATP.35: 11 residues within 4Å:- Chain 7: L.2191, T.2192, S.2226, G.2227, S.2228, G.2229, K.2230, S.2231, M.2232, M.2373
- Ligands: MG.36
8 PLIP interactions:8 interactions with chain 7- Hydrogen bonds: 7:T.2192, 7:T.2192, 7:G.2227, 7:S.2228, 7:G.2229, 7:K.2230, 7:S.2231, 7:M.2232
ATP.40: 12 residues within 4Å:- Chain 8: T.2192, S.2226, G.2227, S.2228, G.2229, K.2230, S.2231, M.2232, M.2373, I.2374, R.2726
- Ligands: MG.41
9 PLIP interactions:9 interactions with chain 8- Hydrogen bonds: 8:T.2192, 8:T.2192, 8:G.2227, 8:S.2228, 8:G.2229, 8:K.2230, 8:S.2231, 8:M.2232, 8:R.2726
- 3 x ZN: ZINC ION(Non-covalent)
- 8 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
ANP.27: 7 residues within 4Å:- Chain Z: V.2569, G.2598, S.2599, G.2600, K.2601, T.2602, M.2603
8 PLIP interactions:8 interactions with chain Z- Hydrogen bonds: Z:V.2569, Z:V.2569, Z:G.2598, Z:S.2599, Z:G.2600, Z:K.2601, Z:T.2602, Z:M.2603
ANP.28: 8 residues within 4Å:- Chain Z: P.2908, L.2909, V.2910, G.2940, G.2942, K.2943, T.2944, T.2945
6 PLIP interactions:6 interactions with chain Z- Hydrogen bonds: Z:V.2910, Z:V.2910, Z:G.2940, Z:G.2942, Z:K.2943, Z:T.2945
ANP.31: 8 residues within 4Å:- Chain 0: P.2908, L.2909, V.2910, G.2940, G.2942, K.2943, T.2944, T.2945
5 PLIP interactions:5 interactions with chain 0- Hydrogen bonds: 0:V.2910, 0:V.2910, 0:G.2940, 0:G.2942, 0:K.2943
ANP.33: 9 residues within 4Å:- Chain 0: V.2569, G.2598, S.2599, G.2600, K.2601, T.2602, M.2603, P.2796, R.2797
8 PLIP interactions:8 interactions with chain 0- Hydrogen bonds: 0:V.2569, 0:V.2569, 0:G.2598, 0:S.2599, 0:G.2600, 0:K.2601, 0:T.2602, 0:M.2603
ANP.37: 8 residues within 4Å:- Chain 7: V.2569, G.2598, S.2599, G.2600, K.2601, T.2602, M.2603, R.2797
8 PLIP interactions:8 interactions with chain 7- Hydrogen bonds: 7:V.2569, 7:V.2569, 7:G.2598, 7:S.2599, 7:G.2600, 7:K.2601, 7:T.2602, 7:M.2603
ANP.38: 8 residues within 4Å:- Chain 7: P.2908, L.2909, V.2910, G.2940, G.2942, K.2943, T.2944, T.2945
5 PLIP interactions:5 interactions with chain 7- Hydrogen bonds: 7:V.2910, 7:V.2910, 7:G.2940, 7:G.2942, 7:K.2943
ANP.42: 10 residues within 4Å:- Chain 8: V.2569, P.2597, G.2598, S.2599, G.2600, K.2601, T.2602, M.2603, P.2796, R.2797
8 PLIP interactions:8 interactions with chain 8- Hydrogen bonds: 8:V.2569, 8:V.2569, 8:G.2598, 8:S.2599, 8:G.2600, 8:K.2601, 8:T.2602, 8:M.2603
ANP.43: 8 residues within 4Å:- Chain 8: P.2908, L.2909, V.2910, G.2940, G.2942, K.2943, T.2944, T.2945
5 PLIP interactions:5 interactions with chain 8- Hydrogen bonds: 8:V.2910, 8:V.2910, 8:G.2940, 8:G.2942, 8:K.2943
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chaaban, S. et al., Structure of dynein-dynactin on microtubules shows tandem adaptor binding. Nature (2022)
- Release Date
- 2022-07-27
- Peptides
- ARP1 actin related protein 1 homolog A: ABCDEFGI
Actin, cytoplasmic 1: H
Arp11: J
Capping protein (Actin filament) muscle Z-line, alpha 1: K
F-actin capping protein beta subunit: L
Dynactin subunit 2: MNPQ
Dynactin subunit 3: OR
Dynactin subunit 1: ST
Dynactin 6: U
Dynactin subunit 5: V
BICD family-like cargo adapter 1: WXfg
Dynactin subunit 4: Y
Cytoplasmic dynein 1 heavy chain 1: Z078
Cytoplasmic dynein 1 intermediate chain 2: 129a
Cytoplasmic dynein 1 light intermediate chain 2: 34bc
Dynein light chain roadblock-type 1: 56de - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GI
IH
HJ
JK
KL
LM
MN
NP
PQ
QO
OR
RS
ST
TU
UV
VW
WX
Xf
wg
xY
YZ
e0
f7
m8
n1
g2
h9
oa
p3
i4
jb
qc
r5
k6
ld
se
t
SMTL ID : 7z8f.1
Composite structure of dynein-dynactin-BICDR on microtubules
ARP1 actin related protein 1 homolog A
Toggle Identical (ABDEFI)Actin, cytoplasmic 1
Arp11
Capping protein (Actin filament) muscle Z-line, alpha 1
F-actin capping protein beta subunit
Dynactin subunit 2
Dynactin subunit 3
Dynactin subunit 1
Dynactin 6
Dynactin subunit 5
BICD family-like cargo adapter 1
Toggle Identical (Wf)Dynactin subunit 4
Cytoplasmic dynein 1 heavy chain 1
Toggle Identical (Z0)Cytoplasmic dynein 1 intermediate chain 2
Toggle Identical (19)Cytoplasmic dynein 1 light intermediate chain 2
Toggle Identical (3c)Dynein light chain roadblock-type 1
Toggle Identical (56de)Related Entries With Identical Sequence
1z09.1 | 2oan.1 | 2oan.2 | 2oan.3 | 3u4l.1 | 5adx.1 | 5nw4.1 | 6anu.1 | 6f1t.1 | 6f1u.1 | 6f1z.1 | 6f38.1 | 6f3a.1 | 6ltj.1 | 6rlb.1 | 6sc2.1 | 6znl.1 | 6znm.1 | 6znn.1 | 6zno.1 | 6zo4.1 | 7ccc.1 | 7pdz.1 | 7qj5.1 | 7qj6.1 | 7qj7.1 | 7qj8.1 | 7qj9.1 | 7qja.1 | 7qjb.1 more...less...7qjc.1 | 7vdv.1 | 7y8r.1 | 7z8g.1 | 7z8h.1 | 7z8i.1 | 7z8j.1 | 7z8k.1 | 7z8l.1 | 7z8m.1 | 7ztc.1 | 7ztd.1 | 8iah.1 | 8iai.1 | 8ib2.1 | 8ib8.1 | 8j07.874 | 8j07.892 | 8j07.913 | 8j07.933 | 8oi6.1 | 8p94.1 | 8pqv.1 | 8pqw.1 | 8pqy.1 | 8pqz.1 | 8pr0.1 | 8pr1.1 | 8pr2.1 | 8pr3.1 | 8pr4.1 | 8ptk.1 | 8qr1.1 | 8rgg.1 | 8rgh.1 | 8vrd.1 | 8vrj.1 | 8vrk.1 | 8x15.1 | 8x19.1 | 8x1c.1 | 8xvg.1 | 8xvt.1 | 9c57.1 | 9c62.1 | 9c6n.1