SMTL ID : 8d81.1

Cereblon~DDB1 bound to Pomalidomide

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.323, C.326, C.391, C.394 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.323, B:C.326, B:C.391, B:C.394

1 x Y70: S-Pomalidomide(Non-covalent)

Y70.2: 10 residues within 4Å: Chain B: V.350, P.352, H.353, H.378, S.379, W.380, W.386, H.397, W.400, F.402 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.380, B:W.386, B:W.386 Hydrogen bonds: B:H.378, B:W.380

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watson, E.R. et al., Molecular glue CELMoD compounds are regulators of cereblon conformation. Science (2022)

Release Date

2022-07-20

Peptides

DNA damage-binding protein 1: A
Protein cereblon: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA damage-binding protein 1

Protein cereblon

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