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SMTL ID : 8dj9.1

Carbonic Anhydrase II in complex with Ibuprofen

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1:	6 residues within 4Å: Chain A: H.3, W.5, F.20, P.200, P.201 Ligands: IZP.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.5, A:P.200
GOL.2:	12 residues within 4Å: Chain A: W.5, Y.7, N.62, H.64, A.65, N.67, Q.92, H.94, H.96, T.199 Ligands: IZP.3, ZN.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.62, A:N.67, A:N.67, A:Q.92 Water bridges: A:H.64

1 x IZP: (2R)-2-[4-(2-methylpropyl)phenyl]propanoic acid(Non-covalent)

IZP.3:

18 residues within 4Å:

Chain A: Q.92, H.94, H.96, H.119, V.121, F.130, V.134, L.140, V.142, L.197, T.198, T.199, P.201, V.206, W.208
Ligands: GOL.1, GOL.2, ZN.6

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:F.130, A:V.142, A:L.197, A:L.197
Water bridges: A:T.198
Salt bridges: A:H.94, A:H.96, A:H.119

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4:	7 residues within 4Å: Chain A: Y.7, G.12, P.13, D.242, W.244, R.245, P.246 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.242, A:W.244 Water bridges: A:G.8
TRS.5:	7 residues within 4Å: Chain A: P.46, L.47, L.188, D.189, Y.190, S.258, F.259 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.47, A:S.258 Water bridges: A:L.188, A:S.258

1 x ZN: ZINC ION(Non-covalent)

ZN.6:

6 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: GOL.2, IZP.3

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Combs, J.C. et al., Ibuprofen: a weak inhibitor of Carbonic Anhydrase II. Acta Crystallogr.,Sect.F (2022)

Release Date

2022-11-09

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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