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SMTL ID : 4yxi.1

Human Carbonic Anhydrase II complexed with an inhibitor with a benzenesulfonamide group (2).

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.96 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

5 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: 4J8.3

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x MBO: MERCURIBENZOIC ACID(Non-covalent)

MBO.2:

5 residues within 4Å:

Chain A: Q.135, Q.136, P.137, E.204, C.205

4 PLIP interactions:

3 interactions with chain A, 1 Ligand-Water interactions

Hydrophobic interactions: A:P.137
Metal complexes: A:Q.136, A:C.205, H₂O.5

2 x 4J8: 4-methylbenzenesulfonamide(Non-covalent)

4J8.3:	12 residues within 4Å: Chain A: Q.92, H.94, H.96, H.119, V.121, V.142, L.197, T.198, T.199, W.208 Ligands: ZN.1, GOL.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.121, A:L.197 Hydrogen bonds: A:T.198, A:T.198
4J8.4:	3 residues within 4Å: Chain A: D.179, R.181, G.182 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.181 Water bridges: A:R.181

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5:

8 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199
Ligands: 4J8.3

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:N.67, A:Q.92
Water bridges: A:T.199

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Gaspari, R. et al., Kinetic and Structural Insights into the Mechanism of Binding of Sulfonamides to Human Carbonic Anhydrase by Computational and Experimental Studies. J.Med.Chem. (2016)

Release Date

2016-02-03

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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