SMTL ID : 8e7s.1

III2IV2 respiratory supercomplex from Saccharomyces cerevisiae with 4 bound UQ6

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

24 x PEF: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PEF.1: 11 residues within 4Å: Chain A: F.285, I.300, K.301, Q.350, R.353, L.354, S.357, E.362 Chain D: S.22, Y.26, L.30 Ligand excluded by PLIP PEF.2: 4 residues within 4Å: Chain A: H.345, F.346 Chain I: F.3 Ligands: CDL.14 Ligand excluded by PLIP PEF.3: 17 residues within 4Å: Chain A: S.450, D.451, M.455 Chain C: V.60, S.67 Chain I: I.17, L.38, H.222, S.223, I.226, F.227, L.230, F.234 Ligands: PEF.7, PCF.8, CDL.14, UQ6.17 Ligand excluded by PLIP PEF.6: 7 residues within 4Å: Chain 4: W.164 Chain C: V.75, E.76, I.79, S.80 Chain D: G.47, W.48 Ligand excluded by PLIP PEF.7: 13 residues within 4Å: Chain C: G.70, A.71, S.73, T.74, T.77 Chain I: N.74, I.77, L.81, M.237 Chain K: L.269, T.273, L.277 Ligands: PEF.3 Ligand excluded by PLIP PEF.9: 6 residues within 4Å: Chain E: I.36, W.39 Chain K: F.82 Chain V: K.153 Ligands: PEF.29, PCF.32 Ligand excluded by PLIP PEF.12: 13 residues within 4Å: Chain H: Q.55 Chain I: W.29, F.94, M.95, A.98, Y.102, Y.103, T.317, F.327, V.330, F.333 Ligands: CDL.10, CDL.26 Ligand excluded by PLIP PEF.18: 10 residues within 4Å: Chain 4: T.112, V.116, M.193, I.195 Chain I: F.3, N.7, Y.9, L.10, V.13 Ligands: UQ6.50 Ligand excluded by PLIP PEF.20: 8 residues within 4Å: Chain I: F.94, H.253, W.273, F.333, V.334, G.337, Q.338, A.341 Ligand excluded by PLIP PEF.29: 11 residues within 4Å: Chain J: V.453 Chain O: Y.21 Chain U: V.57, F.60, S.61, K.62 Chain V: L.103, V.107, Q.151 Ligands: PEF.9, PCF.32 Ligand excluded by PLIP PEF.30: 8 residues within 4Å: Chain H: G.39, F.41, H.42, V.45 Chain V: S.93, A.96, K.97 Ligands: PCF.11 Ligand excluded by PLIP PEF.31: 12 residues within 4Å: Chain J: L.334, L.339, I.342, F.346, W.415 Chain V: L.87, N.88, G.90, S.92, I.95, V.99 Ligands: PCF.11 Ligand excluded by PLIP PEF.33: 10 residues within 4Å: Chain W: Q.350, R.353, S.357, E.362, R.456 Chain Z: S.22, L.23, Y.26, L.30 Ligands: PEF.35 Ligand excluded by PLIP PEF.35: 7 residues within 4Å: Chain 4: F.3, L.10 Chain W: H.345, R.456 Chain Z: W.33 Ligands: PEF.33, CDL.45 Ligand excluded by PLIP PEF.36: 16 residues within 4Å: Chain 4: L.38, H.222, S.223, I.226, F.227, L.230 Chain W: S.450, D.451, M.454 Chain Y: V.60, M.63, S.67 Ligands: PCF.34, PEF.40, CDL.45, UQ6.48 Ligand excluded by PLIP PEF.39: 9 residues within 4Å: Chain I: D.160, W.164 Chain Y: E.76, I.79, T.83 Chain Z: F.44, W.48, P.49 Ligands: PCF.34 Ligand excluded by PLIP PEF.40: 17 residues within 4Å: Chain 4: I.77, L.81, M.237, A.241, V.244, F.245 Chain 6: L.269, K.272, T.273, I.276, L.277 Chain Y: G.70, A.71, S.73, T.74, T.77 Ligands: PEF.36 Ligand excluded by PLIP PEF.41: 6 residues within 4Å: Chain 0: I.36, W.39 Ligands: PCF.56, PEF.60 Chain g: K.62 Chain h: K.153 Ligand excluded by PLIP PEF.44: 13 residues within 4Å: Chain 1: E.82 Chain 3: Q.55 Chain 4: F.94, M.97, A.98, Y.102, Y.103, T.317, F.327, V.330, F.333 Ligands: CDL.42, PEF.51 Ligand excluded by PLIP PEF.49: 12 residues within 4Å: Chain 4: F.3, S.6, N.7, Y.9, L.12, V.13 Chain I: T.112, V.116, I.119, M.193, I.195, M.199 Ligand excluded by PLIP PEF.51: 9 residues within 4Å: Chain 4: M.91, T.250, W.273, P.277, F.333, V.334, Q.338 Chain 6: H.185 Ligands: PEF.44 Ligand excluded by PLIP PEF.60: 9 residues within 4Å: Chain 5: V.453 Ligands: PEF.41, PCF.56 Chain g: V.57, F.60, S.61, K.62 Chain h: L.103, Q.151 Ligand excluded by PLIP PEF.61: 7 residues within 4Å: Chain 3: F.41, H.42, V.45 Ligands: PCF.63 Chain h: S.93, A.96, K.97 Ligand excluded by PLIP PEF.62: 13 residues within 4Å: Chain 5: L.334, L.339, I.342, F.346, W.415, F.418 Ligands: PCF.63 Chain h: L.87, N.88, G.90, S.92, I.95, V.99 Ligand excluded by PLIP

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)(Covalent)

FES.4: 9 residues within 4Å: Chain C: C.159, H.161, L.162, C.164, C.178, C.180, H.181, G.182, S.183 7 PLIP interactions: 7 interactions with chain C, Metal complexes: C:C.159, C:H.161, C:H.161, C:C.178, C:C.178, C:H.181, C:S.183 FES.37: 8 residues within 4Å: Chain Y: C.159, H.161, L.162, C.164, C.178, C.180, H.181, S.183 5 PLIP interactions: 5 interactions with chain Y, Metal complexes: Y:C.159, Y:H.161, Y:H.161, Y:C.178, Y:H.181

10 x CDL: CARDIOLIPIN(Non-covalent)

CDL.5: 15 residues within 4Å: Chain C: K.44, K.51, G.52, S.54, Y.55, F.58, M.59 Chain E: F.3 Chain H: P.36, L.37 Chain K: W.286 Chain V: K.97, A.100 Ligands: CDL.23, CDL.26 10 PLIP interactions: 8 interactions with chain C, 1 interactions with chain H, 1 interactions with chain V Hydrophobic interactions: C:Y.55, C:F.58, C:F.58, V:A.100 Hydrogen bonds: C:K.44, C:K.44, C:Y.55, H:L.37 Salt bridges: C:K.44, C:K.51 CDL.10: 13 residues within 4Å: Chain F: H.85 Chain H: S.48, R.51, F.52, Q.55 Chain I: N.27, Y.28, W.29, F.88, M.91, Y.103 Ligands: PEF.12, CDL.26 7 PLIP interactions: 4 interactions with chain I, 2 interactions with chain H, 1 interactions with chain F Hydrophobic interactions: I:F.88, I:F.88 Hydrogen bonds: I:Y.28, I:W.29, H:Q.55 Salt bridges: H:R.51, F:H.85 CDL.14: 12 residues within 4Å: Chain A: H.345, K.349, M.454, M.455, R.456 Chain I: R.4, I.17, I.18, H.222 Ligands: PEF.2, PEF.3, PCF.8 7 PLIP interactions: 4 interactions with chain I, 3 interactions with chain A Hydrophobic interactions: I:I.17, I:I.18 Salt bridges: I:R.4, I:H.222, A:H.345 Hydrogen bonds: A:M.454, A:M.454 CDL.23: 11 residues within 4Å: Chain H: K.35 Chain J: N.406, Y.470, K.487 Chain L: F.54 Chain V: F.94, K.97, G.98, A.101, F.105 Ligands: CDL.5 10 PLIP interactions: 4 interactions with chain V, 4 interactions with chain J, 1 interactions with chain H, 1 interactions with chain L Hydrophobic interactions: V:K.97, V:A.101, V:F.105, V:F.105, J:Y.470, L:F.54 Hydrogen bonds: J:N.406, J:Y.470 Salt bridges: J:K.487, H:K.35 CDL.26: 17 residues within 4Å: Chain F: H.85 Chain H: L.37, I.40, A.44, N.47 Chain I: Y.28, L.235 Chain K: S.279, Y.281, L.282, I.285, W.286, K.288, K.289 Ligands: CDL.5, CDL.10, PEF.12 10 PLIP interactions: 3 interactions with chain H, 6 interactions with chain K, 1 interactions with chain I Hydrophobic interactions: H:L.37, H:I.40, K:L.282, K:L.282, K:I.285, K:W.286, I:L.235 Hydrogen bonds: H:N.47, K:Y.281 Salt bridges: K:K.288 CDL.38: 14 residues within 4Å: Chain 0: F.3 Chain 3: K.35, P.36, L.37 Chain 6: W.286 Chain Y: K.44, N.47, K.51, G.52, S.54, Y.55, F.58 Ligands: CDL.43, CDL.53 13 PLIP interactions: 7 interactions with chain Y, 4 interactions with chain 3, 2 interactions with chain 0 Hydrophobic interactions: Y:Y.55, Y:Y.55, Y:F.58, 0:F.3, 0:F.3 Hydrogen bonds: Y:N.47, Y:Y.55, 3:K.35, 3:L.37 Salt bridges: Y:K.44, Y:K.51, 3:K.35, 3:K.35 CDL.42: 13 residues within 4Å: Chain 1: H.85 Chain 3: S.48, R.51, F.52 Chain 4: N.27, Y.28, W.29, M.32, F.88, M.91, Y.103 Ligands: CDL.43, PEF.44 8 PLIP interactions: 5 interactions with chain 4, 1 interactions with chain 1, 2 interactions with chain 3 Hydrophobic interactions: 4:F.88 Hydrogen bonds: 4:N.27, 4:Y.28, 4:W.29, 4:Y.103 Salt bridges: 1:H.85, 3:R.51, 3:R.51 CDL.43: 16 residues within 4Å: Chain 1: H.85 Chain 3: I.40, N.43, A.44 Chain 4: Y.28, L.235 Chain 6: S.279, Y.281, L.282, I.285, W.286, K.288, K.289, K.296 Ligands: CDL.38, CDL.42 7 PLIP interactions: 4 interactions with chain 6, 2 interactions with chain 4, 1 interactions with chain 3 Hydrophobic interactions: 6:I.285, 6:W.286, 4:L.235, 3:I.40 Salt bridges: 6:K.288, 6:K.296 Hydrogen bonds: 4:Y.28 CDL.45: 11 residues within 4Å: Chain 4: R.4, I.18, H.222 Chain W: H.345, K.349, M.454, M.455 Ligands: CN5.13, PCF.34, PEF.35, PEF.36 5 PLIP interactions: 3 interactions with chain 4, 2 interactions with chain W Hydrophobic interactions: 4:I.18 Salt bridges: 4:R.4, 4:H.222, W:K.349 Hydrogen bonds: W:M.454 CDL.53: 13 residues within 4Å: Chain 3: K.35 Chain 5: N.406, K.408, Y.470, K.487 Chain 7: F.54 Chain Y: N.46 Ligands: CDL.38 Chain h: F.94, K.97, G.98, A.101, F.105 10 PLIP interactions: 1 interactions with chain 3, 4 interactions with chain h, 4 interactions with chain 5, 1 interactions with chain 7 Salt bridges: 3:K.35, 5:K.487 Hydrophobic interactions: h:F.94, h:K.97, h:A.101, h:F.105, 5:Y.470, 7:F.54 Hydrogen bonds: 5:N.406, 5:Y.470

6 x PCF: 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE(Non-covalent)

PCF.8: 16 residues within 4Å: Chain A: D.428, S.453, M.455 Chain C: Y.57, V.60, G.64, S.68, A.71 Chain D: F.44 Chain E: F.11, N.14, F.17, V.18, I.21 Ligands: PEF.3, CDL.14 5 PLIP interactions: 2 interactions with chain C, 1 interactions with chain E, 1 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: C:A.71, D:F.44 pi-Cation interactions: C:Y.57 Hydrogen bonds: E:N.14 Salt bridges: A:D.428 PCF.11: 4 residues within 4Å: Chain H: H.42 Chain V: S.92 Ligands: PEF.30, PEF.31 No protein-ligand interaction detected (PLIP) PCF.32: 9 residues within 4Å: Chain J: Y.452 Chain V: A.111, V.112, R.114, M.115, Q.119, S.152 Ligands: PEF.9, PEF.29 4 PLIP interactions: 3 interactions with chain V, 1 interactions with chain J Hydrophobic interactions: V:V.112 Hydrogen bonds: V:R.114, V:Q.119, J:Y.452 PCF.34: 15 residues within 4Å: Chain 0: F.11, N.14, F.17, V.18, I.21, F.22 Chain W: W.427, D.428, S.453, M.454 Chain Y: G.64 Chain Z: F.44 Ligands: PEF.36, PEF.39, CDL.45 5 PLIP interactions: 1 interactions with chain W, 2 interactions with chain 0, 2 interactions with chain Z Salt bridges: W:D.428 Hydrophobic interactions: 0:F.22, 0:F.22, Z:F.44, Z:F.44 PCF.56: 8 residues within 4Å: Chain 5: Y.452 Ligands: PEF.41, PEF.60 Chain h: A.111, V.112, R.114, M.115, S.152 4 PLIP interactions: 2 interactions with chain 5, 2 interactions with chain h Hydrogen bonds: 5:Y.452, 5:Y.452 Hydrophobic interactions: h:V.112 Salt bridges: h:R.114 PCF.63: 4 residues within 4Å: Chain 3: H.42 Ligands: PEF.61, PEF.62 Chain h: S.92 1 PLIP interactions: 1 interactions with chain h Hydrogen bonds: h:S.92

1 x CN5: (5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate(Non-covalent)

CN5.13: 12 residues within 4Å: Chain 4: L.12, V.13, Y.16, I.17, I.195, M.199 Chain I: L.12, Y.16, I.195, M.199 Ligands: CDL.45, UQ6.48 5 PLIP interactions: 4 interactions with chain 4, 1 interactions with chain I Hydrophobic interactions: 4:L.12, 4:V.13, 4:Y.16, 4:I.17, I:L.12

6 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)(Covalent)

HEM.15: 16 residues within 4Å: Chain I: Q.43, I.44, G.47, I.48, M.50, Y.54, V.65, R.79, H.82, A.83, A.86, F.89, V.135, H.183, Y.184, P.187 14 PLIP interactions: 14 interactions with chain I, Hydrophobic interactions: I:Q.43, I:I.44, I:I.48, I:Y.54, I:F.89, I:V.135, I:Y.184, I:Y.184 Salt bridges: I:R.79, I:R.79 pi-Stacking: I:H.82, I:H.82, I:H.183 Metal complexes: I:H.82 HEM.16: 18 residues within 4Å: Chain I: W.30, G.33, S.34, L.36, H.96, M.97, K.99, S.105, W.114, G.117, V.118, I.120, V.194, H.197, L.201, S.206, S.207 Ligands: UQ6.17 13 PLIP interactions: 13 interactions with chain I, Hydrophobic interactions: I:W.30, I:L.36, I:I.120, I:V.194, I:L.201 Hydrogen bonds: I:G.33, I:S.34, I:S.34, I:S.207 Salt bridges: I:H.96, I:K.99 Metal complexes: I:H.96, I:H.197 HEM.25: 18 residues within 4Å: Chain K: C.101, C.104, H.105, N.169, L.173, P.175, L.177, I.180, R.184, Y.190, I.191, L.195, F.218, I.223, A.224, M.225, V.251, L.255 12 PLIP interactions: 12 interactions with chain K, Hydrophobic interactions: K:P.175, K:L.177, K:I.180, K:L.195, K:L.195, K:A.224, K:V.251, K:L.255 Hydrogen bonds: K:Y.190, K:A.224 Salt bridges: K:R.184 Metal complexes: K:H.105 HEM.46: 17 residues within 4Å: Chain 4: I.44, G.47, M.50, A.51, Y.54, V.65, R.79, H.82, A.83, A.86, F.89, G.131, C.134, V.135, H.183, Y.184, P.187 11 PLIP interactions: 11 interactions with chain 4, Hydrophobic interactions: 4:I.44, 4:A.51, 4:Y.54, 4:F.89, 4:Y.184, 4:P.187 Salt bridges: 4:R.79 pi-Stacking: 4:H.82, 4:H.183 Metal complexes: 4:H.82, 4:H.183 HEM.47: 20 residues within 4Å: Chain 4: W.30, G.33, S.34, L.36, G.37, M.93, H.96, M.97, K.99, S.105, W.114, G.117, V.118, I.120, V.194, H.197, L.201, S.206, S.207 Ligands: UQ6.48 14 PLIP interactions: 14 interactions with chain 4, Hydrophobic interactions: 4:L.36, 4:W.114, 4:I.120, 4:V.194, 4:V.194, 4:L.201 Hydrogen bonds: 4:G.33, 4:S.34, 4:S.207 Salt bridges: 4:H.96, 4:K.99, 4:R.110 pi-Cation interactions: 4:H.96 Metal complexes: 4:H.197 HEM.57: 16 residues within 4Å: Chain 6: C.101, C.104, H.105, N.169, L.173, P.175, I.180, R.184, Y.190, I.191, L.194, F.218, A.224, M.225, V.251, L.255 11 PLIP interactions: 11 interactions with chain 6, Hydrophobic interactions: 6:N.169, 6:P.175, 6:I.180, 6:L.194, 6:A.224, 6:V.251, 6:L.255 Hydrogen bonds: 6:Y.190, 6:Y.190 Salt bridges: 6:R.184 Metal complexes: 6:H.105

4 x UQ6: 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL(Non-covalent)

UQ6.17: 13 residues within 4Å: Chain C: M.82 Chain I: Y.16, I.17, Q.22, S.34, I.44, F.49, L.198, L.201, M.221 Ligands: PEF.3, HEM.16, UQ6.50 7 PLIP interactions: 7 interactions with chain I Hydrophobic interactions: I:Y.16, I:I.17, I:I.44, I:F.49, I:L.198 Hydrogen bonds: I:Q.22, I:S.34 UQ6.19: 10 residues within 4Å: Chain I: I.125, G.143, V.146, I.147, V.270, P.271, L.275, Y.279, L.282, M.295 4 PLIP interactions: 4 interactions with chain I Hydrophobic interactions: I:I.125, I:L.275, I:Y.279, I:L.282 UQ6.48: 14 residues within 4Å: Chain 4: Y.16, I.17, S.34, L.40, V.41, I.48, F.49, L.198 Chain I: W.164, L.165 Chain Y: M.82 Ligands: CN5.13, PEF.36, HEM.47 7 PLIP interactions: 5 interactions with chain 4, 2 interactions with chain I Hydrophobic interactions: 4:L.40, 4:V.41, 4:F.49, 4:F.49, I:W.164, I:L.165 Hydrogen bonds: 4:S.34 UQ6.50: 15 residues within 4Å: Chain 4: A.126, M.139, G.143, V.146, I.147, I.269, V.270, P.271, L.275, F.278, Y.279, L.282 Chain C: H.181 Ligands: UQ6.17, PEF.18 6 PLIP interactions: 6 interactions with chain 4 Hydrophobic interactions: 4:A.126, 4:I.147, 4:I.147, 4:L.275, 4:Y.279, 4:L.282

4 x HEA: HEME-A(Non-covalent)

HEA.21: 25 residues within 4Å: Chain J: W.237, V.244, L.247, I.248, H.290, H.291, I.314, T.316, G.317, I.320, F.348, G.352, V.356, L.358, A.359, H.368, V.373, H.376, F.377, V.380, L.381, R.438 Chain O: P.89, L.93 Ligands: HEA.24 26 PLIP interactions: 22 interactions with chain J, 4 interactions with chain O, Hydrophobic interactions: J:V.244, J:V.244, J:L.247, J:I.248, J:I.248, J:I.314, J:T.316, J:I.320, J:F.348, J:L.358, J:V.373, J:F.377, J:F.377, J:V.380, J:V.380, J:L.381, O:P.89, O:L.93, O:L.93, O:L.93 Hydrogen bonds: J:D.369 Salt bridges: J:H.368, J:R.438 pi-Stacking: J:H.376 pi-Cation interactions: J:H.291 Metal complexes: J:H.376 HEA.24: 24 residues within 4Å: Chain J: G.26, T.30, R.37, L.40, F.55, V.59, H.62, A.63, M.66, I.67, L.70, W.127, F.377, H.378, I.386, L.389, F.390, F.425, R.438, R.439, A.461, L.465, F.468 Ligands: HEA.21 21 PLIP interactions: 21 interactions with chain J, Hydrophobic interactions: J:T.30, J:R.37, J:A.63, J:M.66, J:I.67, J:L.70, J:F.377, J:F.377, J:I.386, J:I.386, J:I.386, J:L.389, J:F.390, J:A.461, J:L.465, J:F.468, J:F.468 Hydrogen bonds: J:R.439 Salt bridges: J:R.438, J:R.439 Metal complexes: J:H.378 HEA.54: 26 residues within 4Å: Chain 5: G.26, T.30, R.37, F.55, V.59, H.62, A.63, M.66, I.67, L.70, W.127, Y.371, F.377, H.378, L.381, I.386, L.389, F.390, I.424, F.425, M.428, R.438, R.439, A.461, L.465 Ligands: HEA.55 21 PLIP interactions: 21 interactions with chain 5, Hydrophobic interactions: 5:T.30, 5:R.37, 5:A.63, 5:M.66, 5:I.67, 5:L.70, 5:L.70, 5:F.377, 5:F.377, 5:L.381, 5:I.386, 5:I.386, 5:F.390, 5:F.390, 5:I.424, 5:L.465 Hydrogen bonds: 5:R.439 Salt bridges: 5:R.438, 5:R.439 pi-Stacking: 5:F.377 Metal complexes: 5:H.378 HEA.55: 28 residues within 4Å: Chain 5: W.237, V.244, L.247, I.248, H.290, H.291, A.313, I.314, T.316, G.317, I.320, F.348, G.352, G.355, V.356, L.358, A.359, H.368, D.369, V.373, H.376, F.377, V.380, L.381, R.438 Ligands: HEA.54 Chain a: P.89, L.93 26 PLIP interactions: 23 interactions with chain 5, 3 interactions with chain a, Hydrophobic interactions: 5:V.244, 5:V.244, 5:L.247, 5:I.248, 5:I.248, 5:A.313, 5:I.314, 5:T.316, 5:I.320, 5:F.348, 5:L.358, 5:V.373, 5:F.377, 5:F.377, 5:V.380, 5:V.380, 5:L.381, a:P.89, a:L.93, a:L.93 Hydrogen bonds: 5:D.369 Salt bridges: 5:H.368, 5:R.438 pi-Cation interactions: 5:H.290, 5:H.291 Metal complexes: 5:H.376

2 x CU: COPPER (II) ION(Non-covalent)

CU.22: 3 residues within 4Å: Chain J: H.241, H.290, H.291 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:H.241, J:H.290, J:H.291 CU.52: 3 residues within 4Å: Chain 5: H.241, H.290, H.291 3 PLIP interactions: 3 interactions with chain 5 Metal complexes: 5:H.241, 5:H.290, 5:H.291

4 x CUA: DINUCLEAR COPPER ION(Covalent)(Non-covalent)

CUA.27: 6 residues within 4Å: Chain O: H.186, C.221, C.225, H.229, M.232 Ligands: CUA.28 2 PLIP interactions: 2 interactions with chain O Metal complexes: O:C.225, O:H.229 CUA.28: 6 residues within 4Å: Chain O: H.186, C.221, E.223, C.225, H.229 Ligands: CUA.27 4 PLIP interactions: 4 interactions with chain O Metal complexes: O:H.186, O:C.221, O:E.223, O:C.225 CUA.58: 6 residues within 4Å: Ligands: CUA.59 Chain a: C.221, E.223, C.225, H.229, M.232 3 PLIP interactions: 3 interactions with chain a Metal complexes: a:C.225, a:H.229, a:H.229 CUA.59: 6 residues within 4Å: Ligands: CUA.58 Chain a: H.186, C.221, E.223, C.225, H.229 3 PLIP interactions: 3 interactions with chain a Metal complexes: a:H.186, a:C.221, a:C.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hryc, C.F. et al., Structural insights into cardiolipin replacement by phosphatidylglycerol in a cardiolipin-lacking yeast respiratory supercomplex. Nat Commun (2023)

Release Date

2023-05-24

Peptides

Cytochrome b-c1 complex subunit 1, mitochondrial: AW
Cytochrome b-c1 complex subunit 2, mitochondrial: BX
Cytochrome b-c1 complex subunit Rieske, mitochondrial: CY
Cytochrome b-c1 complex subunit 10, mitochondrial: DZ
Cytochrome b-c1 complex subunit 9, mitochondrial: E0
Cytochrome b-c1 complex subunit 7, mitochondrial: F1
Cytochrome b-c1 complex subunit 6, mitochondrial: G2
Cytochrome b-c1 complex subunit 8, mitochondrial: H3
Cytochrome b: I4
Cytochrome c oxidase subunit 1: J5
Cytochrome c1, heme protein, mitochondrial: K6
Cytochrome c oxidase subunit 8, mitochondrial: L7
Cytochrome c oxidase subunit 7, mitochondrial: M8
Cytochrome c oxidase subunit 3: N9
Cytochrome c oxidase subunit 2: Oa
Cytochrome c oxidase subunit 6, mitochondrial: Pb
Cytochrome c oxidase subunit 9, mitochondrial: Qc
Cytochrome c oxidase subunit 13, mitochondrial: Rd
Cytochrome c oxidase subunit 4, mitochondrial: Se
Cytochrome c oxidase subunit 12, mitochondrial: Tf
Cytochrome c oxidase subunit 26, mitochondrial: Ug
Cytochrome c oxidase subunit 5A, mitochondrial: Vh

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

W
a

B
B

X
b

C
C

Y
c

D
D

Z
d

E
E

0
e

F
F

1
f

G
G

2
g

H
H

3
h

I
J

4
j

J
K

5
k

K
L

6
l

L
M

7
m

M
N

8
n

N
O

9
o

O
P

a
p

P
Q

b
q

Q
R

c
r

R
S

d
s

S
T

e
t

T
U

f
u

U
V

g
v

V
W

h
w

Membrane

We predict this structure to be a membrane protein.
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Cytochrome b-c1 complex subunit 1, mitochondrial

Cytochrome b-c1 complex subunit 2, mitochondrial

Cytochrome b-c1 complex subunit Rieske, mitochondrial

Cytochrome b-c1 complex subunit 10, mitochondrial

Cytochrome b-c1 complex subunit 9, mitochondrial

Cytochrome b-c1 complex subunit 7, mitochondrial

Cytochrome b-c1 complex subunit 6, mitochondrial

Cytochrome b-c1 complex subunit 8, mitochondrial

Cytochrome b

Cytochrome c oxidase subunit 1

Cytochrome c1, heme protein, mitochondrial

Cytochrome c oxidase subunit 8, mitochondrial

Cytochrome c oxidase subunit 7, mitochondrial

Cytochrome c oxidase subunit 3

Cytochrome c oxidase subunit 2

Cytochrome c oxidase subunit 6, mitochondrial

Cytochrome c oxidase subunit 9, mitochondrial

Cytochrome c oxidase subunit 13, mitochondrial

Cytochrome c oxidase subunit 4, mitochondrial

Cytochrome c oxidase subunit 12, mitochondrial

Cytochrome c oxidase subunit 26, mitochondrial

Cytochrome c oxidase subunit 5A, mitochondrial

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