SMTL ID : 4awj.1 (3 other biounits)

pVHL:EloB:EloC complex, in complex with capped Hydroxyproline

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-oligomer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: R.9, H.10, K.11, T.12 Chain B: E.13 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.9, A:K.11, A:T.12 ACT.2: 4 residues within 4Å: Chain B: Y.3, V.4, K.5, I.15 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.15 ACT.4: 4 residues within 4Å: Chain B: E.77 Chain C: R.32, R.111, S.118 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.118 Salt bridges: C:R.32, C:R.111

1 x V6F: (4R)-1-ACETYL-4-HYDROXY-N-METHYL-L-PROLINAMIDE(Non-covalent)

V6F.3: 7 residues within 4Å: Chain C: W.38, Y.48, H.60, S.61, Y.62, H.65, W.67 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:W.38, C:W.67 Hydrogen bonds: C:H.60, C:S.61, C:Y.62, C:H.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Van Molle, I. et al., Dissecting Fragment-Based Lead Discovery at the Von Hippel-Lindau Protein:Hypoxia Inducible Factor 1Alpha Protein-Protein Interface. Chem.Biol. (2012)

Release Date

2012-11-14

Peptides

TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2: A
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1: B
VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2

TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1

VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR

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