SMTL ID : 8het.1

Crystal structure of CTSL in complex with E64d

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x E6D: ethyl (3S)-3-hydroxy-4-({(2S)-4-methyl-1-[(3-methylbutyl)amino]-1-oxopentan-2-yl}amino)-4-oxobutanoate(Covalent)

E6D.1: 15 residues within 4Å: Chain A: Q.19, G.23, S.24, C.25, W.26, E.63, N.66, G.67, G.68, L.69, M.70, A.135, D.162, H.163, G.164 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:E.63, A:A.135 Hydrogen bonds: A:Q.19, A:C.25, A:G.68, A:G.68, A:D.162 Salt bridges: A:H.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Structure-based discovery of dual pathway inhibitors for SARS-CoV-2 entry. Nat Commun (2023)

Release Date

2023-12-13

Peptides

Procathepsin L: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Procathepsin L

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