SMTL ID : 8xxv.1

Cryo-EM Structure of the Prostaglandin D2 Receptor 2-indomethacin Coupled to G Protein

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x 01: [(2~{R})-1-hexadecanoyloxy-3-[oxidanyl-[(2~{S},3~{R},5~{R},6~{S})-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-propan-2-yl] (~{Z})-octadec-9-enoate

01.1: 18 residues within 4Å: Chain A: W.69, F.120, S.123, A.124, L.127, D.128, L.131, W.138, H.142, R.143, T.144, A.147, A.148, K.150, V.151, V.154, L.155, I.221 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:A.124, A:L.127, A:L.127, A:D.128, A:R.143, A:A.147, A:A.147, A:K.150, A:V.151, A:V.151, A:V.154, A:L.155 Hydrogen bonds: A:H.142 Salt bridges: A:H.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, J. et al., Molecular basis of lipid and ligand regulation and signaling bias of human DP2 receptor. To Be Published

Release Date

2024-12-04

Peptides

Prostaglandin D2 receptor 2: A
Guanine nucleotide-binding protein G(i) subunit alpha-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
scFv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
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Prostaglandin D2 receptor 2

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

scFv16

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