SMTL ID : 8pqb.1

c-KIT kinase domain in complex with avapritinib derivative 8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

1 x 9XO: (1~{S})-1-(4-fluorophenyl)-~{N},~{N}-dimethyl-1-[2-[4-[6-(1-methylpyrazol-4-yl)pyrrolo[2,1-f][1,2,4]triazin-4-yl]piperazin-1-yl]pyrimidin-5-yl]ethanamine(Non-covalent)

9XO.1: 20 residues within 4Å: Chain A: L.48, G.49, A.50, G.51, G.54, K.55, V.56, A.74, K.76, M.77, L.78, L.90, E.124, Y.125, C.126, C.127, G.129, L.192, C.202, D.203 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.48, A:L.48, A:K.76 Hydrogen bonds: A:C.126 Salt bridges: A:D.203 pi-Cation interactions: A:K.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teuber, A. et al., Avapritinib-based SAR studies unveil a binding pocket in KIT and PDGFRA. Nat Commun (2024)

Release Date

2023-12-27

Peptides

Mast/stem cell growth factor receptor Kit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mast/stem cell growth factor receptor Kit

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