- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-4-8-1-1-1-1-4-2-2-1-1-2-1-4-4-4-4-4-4-mer
- Ligands
- 16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.8: 14 residues within 4Å:- Chain L: G.13, S.14, G.15, M.16, S.155, G.156, D.157, G.158, K.213, E.214, G.301, G.302, T.303, M.305
7 PLIP interactions:7 interactions with chain L- Hydrogen bonds: L:S.14, L:G.15, L:M.16, L:D.157, L:G.158, L:G.302, L:M.305
ATP.10: 12 residues within 4Å:- Chain N: G.21, E.22, A.23, F.24, C.141, G.142, Y.143, R.144, G.307, G.308, T.309, M.311
8 PLIP interactions:8 interactions with chain N- Hydrogen bonds: N:E.22, N:A.23, N:F.24, N:F.24, N:Y.143, N:R.144, N:G.308, N:T.309
ATP.16: 10 residues within 4Å:- Chain 5: T.2192, S.2226, G.2227, S.2228, G.2229, K.2230, S.2231, M.2232, N.2377
- Ligands: MG.17
7 PLIP interactions:7 interactions with chain 5- Hydrogen bonds: 5:T.2192, 5:G.2227, 5:S.2228, 5:G.2229, 5:K.2230, 5:S.2231, 5:M.2232
ATP.22: 11 residues within 4Å:- Chain 6: L.2191, T.2192, S.2226, G.2227, S.2228, G.2229, K.2230, S.2231, M.2232, N.2377
- Ligands: MG.23
7 PLIP interactions:7 interactions with chain 6- Hydrogen bonds: 6:T.2192, 6:G.2227, 6:S.2228, 6:G.2229, 6:K.2230, 6:S.2231, 6:M.2232
ATP.27: 14 residues within 4Å:- Ligands: MG.28
- Chain d: L.2191, T.2192, P.2225, S.2226, G.2227, S.2228, G.2229, K.2230, S.2231, M.2232, M.2373, N.2377, R.2726
9 PLIP interactions:9 interactions with chain d- Hydrogen bonds: d:T.2192, d:T.2192, d:P.2225, d:G.2227, d:S.2228, d:G.2229, d:K.2230, d:S.2231, d:M.2232
ATP.32: 13 residues within 4Å:- Ligands: MG.33
- Chain e: L.2191, T.2192, S.2226, G.2227, S.2228, G.2229, K.2230, S.2231, M.2232, M.2373, N.2377, R.2726
8 PLIP interactions:8 interactions with chain e- Hydrogen bonds: e:T.2192, e:T.2192, e:G.2227, e:S.2228, e:G.2229, e:K.2230, e:S.2231, e:M.2232
- 3 x ZN: ZINC ION(Non-covalent)
ZN.11: 4 residues within 4Å:- Chain 1: C.30, C.33, C.284, C.287
No protein-ligand interaction detected (PLIP)ZN.12: 4 residues within 4Å:- Chain 1: C.51, C.54, C.70, C.73
No protein-ligand interaction detected (PLIP)ZN.13: 5 residues within 4Å:- Chain 1: C.76, C.79, H.81, C.111, C.114
No protein-ligand interaction detected (PLIP)- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.15: 2 residues within 4Å:- Chain 5: T.1913
- Ligands: ADP.14
No protein-ligand interaction detected (PLIP)MG.17: 2 residues within 4Å:- Chain 5: S.2231
- Ligands: ATP.16
No protein-ligand interaction detected (PLIP)MG.21: 2 residues within 4Å:- Chain 6: T.1913
- Ligands: ADP.20
No protein-ligand interaction detected (PLIP)MG.23: 2 residues within 4Å:- Chain 6: S.2231
- Ligands: ATP.22
No protein-ligand interaction detected (PLIP)MG.28: 2 residues within 4Å:- Ligands: ATP.27
- Chain d: S.2231
No protein-ligand interaction detected (PLIP)MG.33: 2 residues within 4Å:- Ligands: ATP.32
- Chain e: S.2231
No protein-ligand interaction detected (PLIP)- 4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
ANP.29: 11 residues within 4Å:- Chain d: V.2569, P.2596, P.2597, G.2598, S.2599, G.2600, K.2601, T.2602, M.2603, P.2796, T.2800
9 PLIP interactions:9 interactions with chain d- Hydrogen bonds: d:V.2569, d:V.2569, d:P.2596, d:G.2598, d:S.2599, d:G.2600, d:K.2601, d:T.2602, d:M.2603
ANP.30: 9 residues within 4Å:- Chain d: P.2908, L.2909, V.2910, S.2939, G.2940, A.2941, G.2942, K.2943, T.2944
6 PLIP interactions:6 interactions with chain d- Hydrogen bonds: d:V.2910, d:V.2910, d:G.2940, d:A.2941, d:G.2942, d:K.2943
ANP.34: 10 residues within 4Å:- Chain e: V.2569, P.2596, P.2597, G.2598, S.2599, G.2600, K.2601, T.2602, M.2603, T.2800
8 PLIP interactions:8 interactions with chain e- Hydrogen bonds: e:V.2569, e:V.2569, e:G.2598, e:S.2599, e:G.2600, e:K.2601, e:T.2602, e:M.2603
ANP.35: 9 residues within 4Å:- Chain e: P.2908, L.2909, V.2910, S.2939, G.2940, A.2941, G.2942, K.2943, T.2944
6 PLIP interactions:6 interactions with chain e- Hydrogen bonds: e:V.2910, e:V.2910, e:G.2940, e:A.2941, e:G.2942, e:K.2943
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, K. et al., Molecular mechanism of dynein-dynactin complex assembly by LIS1. Science (2024)
- Release Date
- 2024-03-27
- Peptides
- Platelet-activating factor acetylhydrolase IB subunit beta: ABCD
ARP1 actin related protein 1 homolog A: EFGHIJKM
Actin, cytoplasmic 1: L
Arp11: N
Capping protein (Actin filament) muscle Z-line, alpha 1: O
F-actin-capping protein subunit beta: P
Dynactin subunit 2: QRTU
Dynactin subunit 3: SV
Dynactin subunit 1: WX
Dynactin 6: Y
Dynactin subunit 5: Z
C-Jun-amino-terminal kinase-interacting protein 3: 0o
Dynactin subunit 4: 1
Dynein light chain 1, cytoplasmic: 2349
Cytoplasmic dynein 1 heavy chain 1: 56de
Cytoplasmic dynein 1 intermediate chain 2: 78fg
Cytoplasmic dynein 1 light intermediate chain 2: ahil
Dynein light chain Tctex-type 1: bcmp
Dynein light chain roadblock-type 1: jknq - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
1B
2C
3D
4E
AF
BG
CH
DI
EJ
FK
GM
IL
HN
JO
KP
LQ
MR
NT
PU
QS
OV
RW
SX
TY
UZ
W0
Xo
x1
Y2
a3
b4
d9
i5
e6
fd
me
n7
g8
hf
og
pa
jh
qi
rl
ub
kc
lm
vp
yj
sk
tn
wq
z
SMTL ID : 8ptk.1
Composite structure of Dynein-Dynactin-JIP3-LIS1
Platelet-activating factor acetylhydrolase IB subunit beta
Toggle Identical (AB) Toggle Identical (CD)ARP1 actin related protein 1 homolog A
Toggle Identical (EFHIJKM)Actin, cytoplasmic 1
Arp11
Capping protein (Actin filament) muscle Z-line, alpha 1
F-actin-capping protein subunit beta
Dynactin subunit 2
Dynactin subunit 3
Dynactin subunit 1
Dynactin 6
Dynactin subunit 5
C-Jun-amino-terminal kinase-interacting protein 3
Dynactin subunit 4
Dynein light chain 1, cytoplasmic
Toggle Identical (2349)Cytoplasmic dynein 1 heavy chain 1
Cytoplasmic dynein 1 intermediate chain 2
Cytoplasmic dynein 1 light intermediate chain 2
Dynein light chain Tctex-type 1
Toggle Identical (bcmp)Dynein light chain roadblock-type 1
Toggle Identical (jknq)Related Entries With Identical Sequence
1f3c.1 | 1f95.1 | 1f96.1 | 1z09.1 | 2oan.1 | 2oan.2 | 2oan.3 | 3u4l.1 | 3zke.1 | 3zke.2 | 3zke.3 | 3zkf.1 | 3zkf.2 | 3zkf.3 | 5adx.1 | 5nw4.1 | 6anu.1 | 6f1t.1 | 6f1u.1 | 6f1z.1 | 6f38.1 | 6f3a.1 | 6ltj.1 | 6rlb.1 | 6sc2.1 | 6znl.1 | 6znm.1 | 6znn.1 | 6zno.1 | 6zo4.1 more...less...7ccc.1 | 7pdz.1 | 7qj5.1 | 7qj6.1 | 7qj7.1 | 7qj8.1 | 7qj9.1 | 7qja.1 | 7qjb.1 | 7qjc.1 | 7vdv.1 | 7y8r.1 | 7z8f.1 | 7z8g.1 | 7z8h.1 | 7z8i.1 | 7z8j.1 | 7z8k.1 | 7z8l.1 | 7z8m.1 | 7ztc.1 | 7ztd.1 | 8iah.1 | 8iai.1 | 8ib2.1 | 8ib8.1 | 8j07.790 | 8j07.791 | 8j07.792 | 8j07.793 | 8j07.794 | 8j07.795 | 8j07.796 | 8j07.797 | 8j07.798 | 8j07.800 | 8j07.801 | 8j07.802 | 8j07.803 | 8j07.804 | 8j07.805 | 8j07.806 | 8j07.807 | 8j07.808 | 8j07.809 | 8j07.811 | 8j07.874 | 8j07.879 | 8j07.880 | 8j07.881 | 8j07.882 | 8j07.883 | 8j07.884 | 8j07.886 | 8j07.892 | 8j07.900 | 8j07.901 | 8j07.902 | 8j07.903 | 8j07.904 | 8j07.905 | 8j07.907 | 8j07.913 | 8j07.919 | 8j07.920 | 8j07.921 | 8j07.922 | 8j07.923 | 8j07.924 | 8j07.926 | 8j07.933 | 8j07.941 | 8j07.942 | 8j07.943 | 8j07.944 | 8j07.945 | 8j07.946 | 8j07.948 | 8oi6.1 | 8p94.1 | 8pqv.1 | 8pqw.1 | 8pqy.1 | 8pqz.1 | 8pr0.1 | 8pr1.1 | 8pr2.1 | 8pr3.1 | 8pr4.1 | 8qr1.1 | 8rgg.1 | 8rgh.1 | 8vrd.1 | 8vrj.1 | 8vrk.1 | 8x15.1 | 8x19.1 | 8x1c.1 | 8xvg.1 | 8xvt.1 | 9c57.1 | 9c62.1 | 9c6n.1