SMTL ID : 8qvf.1

Comparison of room-temperature and cryogenic structures of soluble Epoxide Hydrolase with ligands bound.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x XQ9: 1-(1-adamantyl)-3-(1-methylsulfonylpiperidin-4-yl)urea(Non-covalent)

XQ9.1: 13 residues within 4Å: Chain A: F.268, D.336, W.337, M.340, T.361, Y.384, Q.385, L.409, M.420, Y.467, V.499, H.525, W.526 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.268, A:W.337, A:L.409, A:V.499, A:W.526, A:W.526 Hydrogen bonds: A:D.336, A:D.336, A:Y.384, A:Y.467 XQ9.2: 13 residues within 4Å: Chain B: F.268, D.336, W.337, M.340, T.361, Y.384, Q.385, L.409, M.420, Y.467, V.499, H.525, W.526 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.268, B:W.337, B:L.409, B:V.499, B:W.526, B:W.526 Hydrogen bonds: B:D.336, B:D.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dunge, A. et al., Exploring serial crystallography for drug discovery. Iucrj (2024)

Release Date

2024-08-14

Peptides

Bifunctional epoxide hydrolase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bifunctional epoxide hydrolase 2

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