SMTL ID : 8qvg.1

Comparison of room-temperature and cryogenic structures of soluble Epoxide Hydrolase with ligands bound.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x 6N8: N-(3,3-DIPHENYLPROPYL)PYRROLIDINE-1-CARBOXAMIDE(Non-covalent)

6N8.1: 16 residues within 4Å: Chain A: F.268, D.336, W.337, M.340, Y.384, Q.385, F.388, L.409, M.420, L.429, Y.467, D.497, F.498, V.499, H.525, W.526 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.268, A:F.268, A:Y.384, A:Y.384, A:F.388, A:L.409, A:L.429, A:F.498, A:V.499, A:H.525, A:W.526 Hydrogen bonds: A:D.336, A:Y.384, A:Q.385, A:Y.467 pi-Stacking: A:W.337, A:W.337, A:H.525 6N8.2: 16 residues within 4Å: Chain B: F.268, D.336, W.337, M.340, Y.384, Q.385, F.388, L.409, M.420, L.429, Y.467, D.497, F.498, V.499, H.525, W.526 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:F.268, B:F.268, B:Y.384, B:Y.384, B:F.388, B:L.409, B:L.429, B:F.498, B:V.499, B:H.525, B:W.526 Hydrogen bonds: B:D.336, B:Q.385 pi-Stacking: B:W.337, B:W.337, B:H.525

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dunge, A. et al., Exploring serial crystallography for drug discovery. Iucrj (2024)

Release Date

2024-08-14

Peptides

Bifunctional epoxide hydrolase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bifunctional epoxide hydrolase 2

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