SMTL ID : 8qvh.1

Comparison of room-temperature and cryogenic structures of soluble Epoxide Hydrolase with ligands bound.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

homo-dimer

Ligands

2 x AUB: 4-[(trans-4-{[(3s,5s,7s)-tricyclo[3.3.1.1~3,7~]dec-1-ylcarbamoyl]amino}cyclohexyl)oxy]benzoic acid(Non-covalent)

AUB.1: 16 residues within 4Å: Chain A: F.268, D.336, W.337, M.340, T.361, Y.384, Q.385, L.409, S.416, M.420, Y.467, F.498, V.499, L.500, H.525, W.526 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:W.337, A:W.337, A:M.340, A:T.361, A:L.409, A:Y.467, A:F.498, A:V.499, A:L.500, A:H.525, A:W.526, A:W.526 Hydrogen bonds: A:D.336, A:D.336, A:Q.385 Water bridges: A:S.416, A:V.417, A:H.525 AUB.2: 16 residues within 4Å: Chain B: F.268, D.336, W.337, M.340, T.361, Y.384, Q.385, L.409, S.416, M.420, Y.467, F.498, V.499, L.500, H.525, W.526 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:W.337, B:W.337, B:M.340, B:T.361, B:L.409, B:Y.467, B:F.498, B:V.499, B:L.500, B:H.525, B:W.526, B:W.526 Hydrogen bonds: B:D.336, B:D.336, B:Y.384, B:Q.385, B:Y.467 Water bridges: B:S.416, B:V.417, B:H.525

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dunge, A. et al., Exploring serial crystallography for drug discovery. Iucrj (2024)

Release Date

2024-08-14

Peptides

Bifunctional epoxide hydrolase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bifunctional epoxide hydrolase 2

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