SMTL ID : 8s14.1

c-KIT kinase domain in complex with sunitinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x B49: N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide(Non-covalent)

B49.1: 17 residues within 4Å: Chain A: L.48, V.56, A.74, K.76, V.107, T.123, E.124, Y.125, C.126, C.127, G.129, N.133, R.137, L.192, C.202, D.203, F.204 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.48, A:V.56, A:V.56, A:K.76, A:V.107, A:Y.125, A:L.192, A:F.204 Hydrogen bonds: A:E.124, A:C.126, A:C.126 Halogen bonds: A:F.204

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: Y.263, P.264, M.266, F.280, M.282, S.283 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.283, A:S.283 EDO.3: 2 residues within 4Å: Chain A: E.278, F.280 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.279

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: Q.168, K.171 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teuber, A. et al., c-KIT kinase domain in complex with sunitinib. To Be Published

Release Date

2025-09-03

Peptides

Mast/stem cell growth factor receptor Kit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mast/stem cell growth factor receptor Kit

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