SMTL ID : 8skz.1

Cryo-EM structure of DDM1-HELLS chimera bound to the nucleosome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-2-2-2-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: Q.204, L.205, K.206, Q.209, M.232, G.233, L.234, G.235, K.236, T.237, I.238, E.271, R.274, F.275, N.665, R.690, R.693, I.694 Ligands: BEF.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.204, A:Q.209, A:G.233, A:G.235, A:K.236, A:T.237 Salt bridges: A:K.236, A:K.236, A:R.693

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 5 residues within 4Å: Chain A: K.236, D.336, E.337, G.663 Ligands: ADP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nartey, W. et al., Cryo-EM complex of DDM1-HELLS chimera bound to the nucleosome. To Be Published

Release Date

2024-11-20

Peptides

ATP-dependent DNA helicase DDM1,Lymphoid-specific helicase chimera: A
Histone H3.2: BE
Histone H2A: CG
Histone H2B 1.1: DH
Histone H4: FI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
E

C
C

G
G

D
D

H
H

F
F

I
I

ATP-dependent DNA helicase DDM1,Lymphoid-specific helicase chimera

Histone H3.2

Histone H2A

Histone H2B 1.1

Histone H4

Related Entries With Identical Sequence