SMTL ID : 9jao.1

The structure of SMARCAD1 bound to the hexasome in the presence of ADP-BeFx

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: S.315, Q.320, M.343, G.344, G.346, K.347, T.348, I.349, W.386, N.756, R.784, V.785 Ligands: BEF.2, MG.3 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.315, A:Q.320, A:G.344, A:G.346, A:K.347, A:T.348, A:T.348, A:T.348, A:N.756, A:N.756 Salt bridges: A:K.347, A:R.784, A:R.784

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 10 residues within 4Å: Chain A: M.343, G.344, K.347, E.448, L.753, G.754, R.781, R.784 Ligands: ADP.1, MG.3 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: T.348, D.447, E.448 Ligands: ADP.1, BEF.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z.C. et al., Nucleosome intermediate preference of SMARCAD1 chromatin remodeler, and the structural insights. To Be Published

Release Date

2025-04-30

Peptides

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1: AJ
Histone H3: BD
Histone H4: CE
Histone H2A: F
Histone H2B 1.1: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

J
K

B
D

D
E

C
B

E
F

F
G

G
H

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1

Histone H3

Histone H4

Histone H2A

Histone H2B 1.1

Related Entries With Identical Sequence