SMTL ID : 5o9g.1

Structure of nucleosome-Chd1 complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-1-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 12 residues within 4Å: Chain K: E.375, L.376, R.377, G.406, K.407, T.408, V.409, W.447, N.779, M.781, R.807 Ligands: BEF.2 13 PLIP interactions: 13 interactions with chain K Hydrogen bonds: K:E.375, K:R.377, K:R.377, K:G.404, K:G.406, K:K.407, K:T.408, K:T.408, K:N.779, K:R.807 Salt bridges: K:K.407, K:R.807, K:R.807

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 7 residues within 4Å: Chain K: M.403, K.407, E.514, I.778, R.804, R.807 Ligands: ADP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Farnung, L. et al., Nucleosome-Chd1 structure and implications for chromatin remodelling. Nature (2017)

Release Date

2017-10-11

Peptides

Histone H3.2: AE
Histone H4: BF
Histone H2A: CG
Histone H2B 1.1: D
Histone H2B 1.1: H
Chromo domain-containing protein 1: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
W

Histone H3.2

Histone H4

Histone H2A

Histone H2B 1.1

Histone H2B 1.1

Chromo domain-containing protein 1

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