SMTL ID : 5e5a.1

Crystal structure of the chromatin-tethering domain of Human cytomegalovirus IE1 protein bound to the nucleosome core particle

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

hetero-2-2-2-2-1-mer

Ligands

4 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.2: 1 residues within 4Å: Chain E: D.91 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:D.91 MG.3: 3 residues within 4Å: Chain F: E.103, K.106, H.107 3 PLIP interactions: 2 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:E.103, F:H.107, H2O.5 MG.4: 1 residues within 4Å: Chain G: D.78 3 PLIP interactions: 1 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:D.78, H2O.6, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fang, Q. et al., Human cytomegalovirus IE1 protein alters the higher-order chromatin structure by targeting the acidic patch of the nucleosome. Elife (2016)

Release Date

2016-02-03

Peptides

Histone H3.2: CG
Histone H4: DH
Histone H2A: EI
Histone H2B 1.1: FJ
C-terminal domain of Regulatory protein IE1: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

G
E

D
B

H
F

E
C

I
G

F
D

J
H

K
K

Histone H3.2

Histone H4

Histone H2A

Histone H2B 1.1

C-terminal domain of Regulatory protein IE1

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