SMTL ID : 9dgg.1

ncPRC1RYBP bound to unmodified nucleosome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain K: C.18, C.21, C.39, C.42 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.18, K:C.21, K:C.39, K:C.42 ZN.2: 4 residues within 4Å: Chain K: C.34, H.36, C.53, C.56 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.34, K:H.36, K:C.53, K:C.56 ZN.3: 4 residues within 4Å: Chain L: C.51, C.54, C.72, C.75 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.51, L:C.54, L:C.72, L:C.75 ZN.4: 5 residues within 4Å: Chain L: C.67, H.69, C.87, T.89, C.90 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:C.67, L:H.69, L:C.87, L:T.89, L:C.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Godinez-Lopez, V. et al., Structural visualization of read-write mechanisms of histone H2A lysine 119 mono-ubiquitination by Polycomb Repressive Complex 1. To Be Published

Release Date

2024-11-20

Peptides

Histone H3.2: AE
Histone H4: BF
Histone H2A type 1: CG
Histone H2B 1.1: DH
Polycomb complex protein BMI-1: K
E3 ubiquitin-protein ligase RING2: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
K

L
L

Histone H3.2

Histone H4

Histone H2A type 1

Histone H2B 1.1

Polycomb complex protein BMI-1

E3 ubiquitin-protein ligase RING2

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