SMTL ID : 8vq4.1

CDK2-CyclinE1 in complex with allosteric inhibitor I-125A.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 01: (8R)-6-(1-benzyl-1H-pyrazole-4-carbonyl)-N-[(2S,3R)-3-(2-cyclohexylethoxy)-1-(methylamino)-1-oxobutan-2-yl]-2-[(1S)-2,2-dimethylcyclopropane-1-carbonyl]-2,6-diazaspiro[3.4]octane-8-carboxamide

01.1: 21 residues within 4Å: Chain A: R.122, F.152, G.153, V.154, P.155, S.181, T.182, P.271, N.272 Chain B: L.12, P.13, L.15, W.17, M.161, Q.162, V.163, Y.165, L.166, P.178, Q.179, H.265 14 PLIP interactions: 10 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:L.12, B:L.15, B:W.17, B:M.161, B:V.163, B:Y.165, B:L.166, B:P.178, B:Q.179, A:F.152 Hydrogen bonds: B:Q.162, A:R.122, A:T.182 Water bridges: A:V.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., An allosteric cyclin E-CDK2 site mapped by paralog hopping with covalent probes. Nat.Chem.Biol. (2024)

Release Date

2024-01-31

Peptides

Cyclin-dependent kinase 2: A
G1/S-specific cyclin-E1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cyclin-dependent kinase 2

G1/S-specific cyclin-E1

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