SMTL ID : 8zfr.1

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with T0070907 and nTZDpa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

homo-dimer

Ligands

1 x EEY: 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide(Non-covalent)

EEY.1: 12 residues within 4Å: Chain A: F.80, C.83, Q.84, S.87, H.121, I.124, Y.125, L.128, F.161, M.162, K.165, H.247 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.80, A:F.80, A:L.128, A:F.161, A:F.161 Hydrogen bonds: A:F.80, A:S.87, A:S.87 pi-Stacking: A:Y.125 pi-Cation interactions: A:K.165

1 x NZA: 5-CHLORO-1-(4-CHLOROBENZYL)-3-(PHENYLTHIO)-1H-INDOLE-2-CARBOXYLIC ACID(Non-covalent)

NZA.2: 15 residues within 4Å: Chain A: F.62, I.79, F.80, G.82, C.83, R.86, A.90, I.124, L.128, L.131, L.138, I.139, S.140, M.146, M.162 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.79, A:R.86, A:L.128, A:L.131, A:I.139, A:I.139 Hydrogen bonds: A:S.140, A:E.141 pi-Stacking: A:F.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shang, J. et al., Unanticipated mechanisms of covalent inhibitor and synthetic ligand cobinding to PPAR gamma. Elife (2024)

Release Date

2024-08-07

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Peroxisome proliferator-activated receptor gamma

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