SMTL ID : 9iif.1

Factor inhibiting HIF-1 alpha in complex with Zn(II) and Desidustat

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

monomer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.138, G.140, E.141, E.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.141, A:E.142, A:E.142 SO4.2: 5 residues within 4Å: Chain A: R.143, E.192, G.193, L.285, N.286 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.192, A:N.286 Salt bridges: A:R.143 SO4.3: 4 residues within 4Å: Chain A: K.107, D.237, R.320, K.324 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.107, A:R.320, A:K.324 SO4.4: 2 residues within 4Å: Chain A: P.72, K.75 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.75 SO4.7: 1 residues within 4Å: Chain A: Q.148 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.148 SO4.8: 2 residues within 4Å: Chain A: K.311, A.312 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.312 Water bridges: A:H.313 SO4.9: 4 residues within 4Å: Chain A: F.224, E.225, A.312, K.315 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.225 Salt bridges: A:K.315 SO4.10: 3 residues within 4Å: Chain A: T.97, H.98, R.143 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.98 Water bridges: A:R.33, A:R.33 Salt bridges: A:H.98, A:R.143

1 x 01: 2-[[1-(cyclopropylmethoxy)-2-oxidanyl-4-oxidanylidene-quinolin-3-yl]carbonylamino]ethanoic acid

01.5: 14 residues within 4Å: Chain A: Y.102, Y.145, Q.147, L.188, T.196, H.199, D.201, F.207, K.214, R.238, H.279, I.281, W.296 Ligands: ZN.6 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.102, A:Y.102, A:Y.102 Hydrogen bonds: A:Y.145, A:Q.147, A:R.238 Water bridges: A:N.294, A:N.294 Salt bridges: A:K.214

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 5 residues within 4Å: Chain A: H.199, D.201, H.279, W.296 Ligands: 01.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.199, A:D.201, A:H.279, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Corner, T.P. et al., Crystallographic and Selectivity Studies on the Approved HIF Prolyl Hydroxylase Inhibitors Desidustat and Enarodustat. Chemmedchem (2024)

Release Date

2025-01-29

Peptides

Hypoxia-inducible factor 1-alpha inhibitor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hypoxia-inducible factor 1-alpha inhibitor

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