SMTL ID : 9v8h.1

PPARgamma ligand-binding domain in complex with PG08-NL and rosiglitazone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

hetero-1-1-mer

Ligands

1 x BRL: 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)(Non-covalent)

BRL.1: 16 residues within 4Å: Chain A: I.79, F.80, G.82, C.83, S.87, H.121, Y.125, L.128, V.137, I.139, F.161, M.162, H.247, L.251, L.267, Y.271 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.139 Hydrogen bonds: A:S.87, A:Y.271, A:Y.271

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 5 residues within 4Å: Chain A: H.15, D.18, S.19, K.22, S.100 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.18, A:K.22, A:S.100 Water bridges: A:D.18, A:D.18, A:D.18

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 4 residues within 4Å: Chain A: A.11, L.12, H.15, P.102 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sigal, M., PPARgamma ligand-binding domain in complex with PG08-NL and rosiglitazone. To Be Published

Release Date

2025-11-05

Peptides

Peroxisome proliferator-activated receptor gamma: A
PG08-NL: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

PG08-NL

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