D3KDM3 (D3KDM3_SARS) SARS coronavirus HKU-39849

ORF1ab polyprotein UniProtKBInterProInteractive Modelling

7073 aa; Sequence (Fasta) ; 13 identical sequences

Available Structures

129 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
Crystal structure of the nsp16 nsp10 SARS coronavirus complex
2xyv
 Heteromer
P0C6X7; 		4241-7067
3×NA; 5×CL; 1×SAH; 1×MG; 2×ZN;
Assess
Crystal structure of the nsp16 nsp10 SARS coronavirus complex
2xyq
 Heteromer
P0C6X7; 		4240-7065
2×CL; 1×SAH; 2×NA; 1×MG; 2×ZN;
Assess
Crystal structure of the nsp16 nsp10 SARS coronavirus complex
2xyr
 Heteromer
P0C6X7; 		4242-7067
1×NA; 5×CL; 1×SFG; 1×MG; 2×ZN;
Assess
SARS-CoV nsp16-nsp10 complexed with N7-GTP
8c0g
 Heteromer
P0C6X7; 		4241-7065
2×PEG; 1×SRC; 1×NA; 2×ZN;
Assess
Crystal structure of the SARS coronavirus nsp14-nsp10 complex with functional ligand SAM
5c8t
 Heteromer
P0C6X7; 		4231-6427
5×ZN; 1×MG; 1×SAM;
Assess
Crystal structure of the SARS coronavirus nsp14-nsp10 complex with functional ligands SAH and GpppA
5c8s
 Heteromer
P0C6X7; 		4231-6427
5×ZN; 1×MG; 1×SAH; 1×G3A;
Assess
Crystal structure of the SARS coronavirus nsp14-nsp10 complex
5c8u
 Heteromer
P0C6X7; 		4231-6427
5×ZN; 1×MG;
Assess
SARS-Coronavirus NSP12 bound to NSP7 and NSP8 co-factors
6nur
 Heteromer
P0C6U8; P0C6X7; 		3838-5288
2×ZN;
Assess
SARS-Coronavirus NSP12 bound to NSP8 co-factor
6nus
 Heteromer
P0C6U8; P0C6X7; 		4487-5287
2×ZN;
Assess
Crystal structure of SARS-CoV papain-like protease in complex with C-terminal domain mouse ISG15
5tl7
 Heteromer
P0C6X7; Q64339; 		1541-1855
1×ZN;
Assess
Crystal structure of SARS-CoV papain-like protease in complex with the C-terminal domain of human I…
5tl6
 Heteromer
P05161; P0C6X7; 		1541-1855
1×ZN; 1×SO4;
Assess
Crystal structure of SARS-CoV papain-like protease PLpro in complex with ubiquitin aldehyde
4mm3
 Heteromer
P0C6X7; P0CG48; 		1541-1855
1×ZN;
Assess
Structure of SARS PLpro bound to a Lys48-linked di-ubiquitin activity based probe
5e6j
 Heteromer
P0C6X7; P0CG47; P0CG48; 		1543-1856
1×ACT; 1×NI;
Assess
Crystal structure of SARS-CoV main protease H41A mutant in complex with an N-terminal substrate
2q6g
 Heteromer
P0C6X7; 		3235-3545
Assess
Crystal structure of nsp10/nsp16 complex of SARS coronavirus
3r24
 Heteromer
P0C6U8; P0C6X7; 		6778-7069
1×SAM; 2×ZN;
Assess
Crystal structure of SARS-CoV super complex of non-structural proteins: the hexadecamer
2ahm
 Heteromer
P0C6X7; 		3837-4111
10×GOL; 2×SO4;
Assess
SARS-CoV nsp10/nsp14 dynamic complex
5nfy
 Heteromer
P0C6X7; Q1T6X8; 		4231-4361
5×ZN; 2×PEG;
Assess
C-terminal domain of SARS-CoV nsp8 complex with nsp7
5f22
 Heteromer
P0C6U8; P0C6X7; 		3996-4110
Assess
Complex structure of PEDV 3CLpro mutant (C144A) with a peptide substrate.
4zuh
 Heteromer
P0C6X7; R4JK63; 		3236-3243
Assess
The octameric SARS-CoV main protease
3iwm
homo-8-mer3241-3541
Assess
Crystal Structure of Nsp 15 from SARS
2h85
homo-6-mer6429-6774
Assess
Crystal structure of Nsp15-H234A mutant- Hexamer in asymmetric unit
2rhb
homo-6-mer6430-6773
Assess
Structure of an N-Terminal Truncated Form of Nendou (NSP15) From SARS-CORONAVIRUS
2ozk
homo-4-mer6456-6761
Assess
Crystal structure of MS8104
5b6o
homo-2-mer3241-3550
Assess
Structure of SARS-CoV main protease bound to potent broad-spectrum non-covalent inhibitor X77
6w79
homo-2-mer3241-3546
2×DMS; 2×X77; 4×MES;
Assess
Structure of SARS main protease bound to inhibitor X47
6wco
homo-2-mer3241-3546
4×MES; 2×X47; 2×DMS;
Assess
Crystal structure of SARS coronavirus main protease complexed with an alpha, beta-unsaturated ethyl…
3tnt
homo-2-mer3241-3546
2×G85;
Assess
Structure of SARS-3CL protease complex with a phenylbenzoyl (S,R)-N-decalin type inhibitor
4twy
homo-2-mer3241-3546
2×3BL;
Assess
Structure of SARS coronavirus main protease in complex with the alpha-ketoamide (S)-N-benzyl-3-((S)…
5n19
homo-2-mer3241-3546
2×D03; 2×DMS;
Assess
complex structure of SARS-CoV 3CL protease with TG-0205486
2zu5
homo-2-mer3241-3546
2×ZU5;
Assess
Crystal structure of SARS coronavirus main protease complexed with an alpha, beta-unsaturated ethyl…
3szn
homo-2-mer3241-3546
2×G75;
Assess
Crystal structure of SARS coronavirus main proteinase(3CLPRO)
2duc
homo-2-mer3241-3546
Assess
Complex structure of SARS-CoV 3C-like protease with TDT
2z94
homo-2-mer3241-3546
2×ZN; 2×TLD;
Assess
A Mechanistic view of Enzyme Inhibition and Peptide Hydrolysis in the Active Site of the SARS-CoV 3…
2z3c
homo-2-mer3241-3546
2×GOL;
Assess
Complex structure of SARS-CoV 3C-like protease with JMF1600
2z9k
homo-2-mer3241-3546
4×DMS; 2×DOZ;
Assess
Structure-Based Drug Design and Structural Biology Study of Novel Nonpeptide Inhibitors of SARS-CoV…
2gz7
homo-2-mer3241-3546
2×D3F;
Assess
Complex structure of SARS-CoV 3C-like protease with PMA
2z9g
homo-2-mer3241-3546
2×HG; 2×BNZ;
Assess
Crystal structures of SARS coronavirus main peptidase inhibited by an aza-peptide epoxide in the sp…
2a5i
homo-2-mer3241-3546
2×AZP; 2×EDO; 2×GOL;
Assess
Crystal structure of SARS coronavirus main protease complexed with Ac-ESTLQ-H (cocrystallization)
3snd
homo-2-mer3241-3546
1×MRD;
Assess
Crystal structure of SARS-CoV main protease with authentic N and C-termini in complex with a Michae…
2hob
homo-2-mer3241-3546
Assess
Structure-Based Drug Design and Structural Biology Study of Novel Nonpeptide Inhibitors of SARS-CoV…
2gz8
homo-2-mer3241-3546
2×F3F;
Assess
Crystal structures of the SARS-coronavirus main proteinase inactivated by benzotriazole compounds
2v6n
homo-2-mer3241-3546
2×XP1; 2×MES; 2×SO4;
Assess
Crystal structure of SARS coronavirus main protease complexed with an alpha, beta-unsaturated ethyl…
3tit
homo-2-mer3241-3546
2×G81;
Assess
Crystal structure of SARS-CoV 3CLpro in complex with the non-covalent inhibitor WU-04
7end
homo-2-mer3241-3546
2×J7R;
Assess
Crystal structure of SARS coronavirus main protease complexed with an alpha, beta-unsaturated ethyl…
3tns
homo-2-mer3241-3546
2×G83;
Assess
Structure of SARS coronavirus main protease in complex with the alpha-ketoamide (S)-N-benzyl-3-((S)…
5n5o
homo-2-mer3241-3546
2×8O5;
Assess
Crystal structure of unbound SARS coronavirus main peptidase in the space group C2
2a5a
homo-2-mer3241-3546
4×CL; 2×EDO;
Assess
Crystal structure of SARS coronavirus main protease complexed with an alpha,beta-unsaturated ethyl …
3tiu
homo-2-mer3241-3546
2×DMS; 2×G82;
Assess
A Mechanistic view of Enzyme Inhibition and Peptide Hydrolysis in the Active Site of the SARS-CoV 3…
2z3d
homo-2-mer3241-3546
2×GOL;
Assess
Structure-Based Drug Design and Structural Biology Study of Novel Nonpeptide Inhibitors of SARS-CoV…
2gz9
homo-2-mer3241-3546
Assess
Crystal structure of SARS-CoV main protease triple mutant STI/A in space group C2
3ea8
homo-2-mer3241-3546
Assess
Crystal structure of SARS-COV main protease Asn214Ala mutant with authorize N-terminus
3m3s
homo-2-mer3241-3546
Assess
A Mechanistic view of Enzyme Inhibition and Peptide Hydrolysis in the Active Site of the SARS-CoV 3…
2z3e
homo-2-mer3241-3546
4×GOL;
Assess
Crystal structure of SARS coronavirus main protease complexed with Ac-DSFDQ-H (soaking)
3snb
homo-2-mer3241-3546
Assess
Structure of SARS-3CL protease complex with a Bromobenzoyl (S,R)-N-decalin type inhibitor
4tww
homo-2-mer3241-3546
2×3A7;
Assess
Crystal structure of SARS coronavirus main protease complexed with Ac-NSTSQ-H (soaking)
3snc
homo-2-mer3241-3546
2×DMS;
Assess
Crystal structure of SARS coronavirus main protease complexed with Ac-ESTLQ-H (Soaking)
3sne
homo-2-mer3241-3546
2×MES;
Assess
SARS-CoV main protease triple mutant STI/A with two N-terminal additional residue (Gly-Ser)
3m3v
homo-2-mer3241-3546
Assess
Crystal structure of SARS 3CLpro C145A mutant
1z1j
homo-2-mer3241-3546
Assess
Crystal structure of SARS coronavirus main peptidase at pH 6.0 in the space group P21
2gt7
homo-2-mer3241-3545
1×MES;
Assess
Crystal Structure Of SARS_CoV Mpro in Complex with an Inhibitor N9
2amd
homo-2-mer3241-3545
2×9IN;
Assess
Crystal Structure Of SARS-CoV Mpro in Complex with an Inhibitor N1
1wof
homo-2-mer3241-3545
2×I12;
Assess
complex structure of SARS-CoV 3C-like protease with JMF1586
2z9l
homo-2-mer3241-3545
4×DMS; 2×DAZ;
Assess
Crystal Structure Of SARS_CoV Mpro in Complex with an Inhibitor N3
2amq
homo-2-mer3241-3545
Assess
Crystal structure of SARS-CoV Mpro mutant in P21 at pH6.9
3e91
homo-2-mer3241-3545
Assess
Crystal structure of SARS-CoV main protease triple mutant STI/A in space group P21
3ea7
homo-2-mer3241-3545
Assess
Crystal structure of Severe Acute Respiratory Syndrome (SARS) 3C-like protease Asn214Ala mutant
2qc2
homo-2-mer3241-3545
Assess
N-terminal finger stabilizes feline drug GC376 in coronavirus 3CL protease
7lcp
homo-2-mer3241-3544
2×UED; 2×EDO; 6×CA;
Assess
Complex structure of SARS-CoV 3C-like protease with EPDTC
2z9j
homo-2-mer3241-3544
4×DMS; 2×DTZ;
Assess
Crystal structures of SARS coronavirus main peptidase inhibited by an aza-peptide epoxide in space …
2a5k
homo-2-mer3241-3544
2×AZP;
Assess
Crystal structure of SARS Coronavirus Main Proteinase (3CLpro)
1uj1
homo-2-mer3241-3543
Assess
N-terminal finger stabilizes feline drug GC376 in coronavirus 3CL protease
7lcq
homo-2-mer3241-3543
4×EDO; 2×UED;
Assess
Crystal structure of SARS Coronavirus Main Proteinase (3CLpro) At pH7.6
1uk3
homo-2-mer3241-3543
Assess
Crystal structure of SARS Coronavirus Main Proteinase (3CLpro) Complexed With An Inhibitor
1uk4
homo-2-mer3241-3543
Assess
Crystal Structure Of SARS-CoV Mpro in Complex with an Inhibitor I2
2d2d
homo-2-mer3241-3543
2×ENB;
Assess
X-ray structural analysis of SARS coronavirus 3CL proteinase in complex with designed anti-viral in…
2alv
homo-2-mer3242-3543
2×CY6;
Assess
Structure Of Sars Cov Main Proteinase At 1.9 A (Ph6.5)
2c3s
homo-2-mer3241-3542
Assess
Crystal structure of SARS Coronavirus Main Proteinase (3CLpro) At pH8.0
1uk2
homo-2-mer3241-3542
Assess
Crystal structure of SARS-CoV main protease quadruple mutant STIF/A with two molecules in one asymm…
3eaj
homo-2-mer3241-3542
Assess
Substrate Specificity Profiling and Identification of a New Class of Inhibitor for the Major Protea…
2op9
homo-2-mer3241-3541
2×WR1;
Assess
Crystal structure of SARS-CoV main protease quadruple mutant STIF/A with one molecule in one asymme…
3ea9
homo-2-mer3241-3541
Assess
Crystal structure of SARS coronavirus main protease complexed with Ac-NSFSQ-H (soaking)
3sna
homo-2-mer3241-3541
Assess
Structure-based Design and Synthesis and Biological Evaluation of Peptidomimetic SARS-3CLpro Inhibi…
2qiq
homo-2-mer3242-3541
2×CYV;
Assess
Crystal Structure of SARS Coronavirus Main Proteinase (P43212)
2bx3
homo-2-mer3242-3541
Assess
A Structural View of the Inactivation of the SARS-Coronavirus Main Proteinase by Benzotriazole Este…
2vj1
homo-2-mer3242-3541
3×DMS; 1×BEZ; 1×XP1;
Assess
Crystal structure of SARS coronavirus main peptidase (with an additional Ala at the N-terminus of e…
2gtb
homo-2-mer3242-3540
2×AZP; 2×ACY;
Assess
Crystal structure of SARS coronavirus main protease in complex with PF07321332
7vlo
homo-2-mer3242-3540
2×4WI;
Assess
Development of Broad-Spectrum Halomethyl Ketone Inhibitors Against Coronavirus Main Protease 3CLpro
3d62
homo-2-mer3243-3541
2×959;
Assess
Crystal structure of SARS main protease in complex with S217622
8hus
homo-2-mer3242-3539
2×7YY;
Assess
Crystal structure of SARS 3C-like protease in apo form
7dqz
homo-2-mer3242-3539
Assess
Crystal structure of SARS coronavirus main peptidase (with an additional Ala at the N-terminus of e…
2gt8
homo-2-mer3243-3540
Assess
Crystal structure of SARS coronavirus main protease in complex with Baicalei
7xax
homo-2-mer3242-3539
1×3WL;
Assess
Crystal Structure of SARS Coronavirus Main Proteinase (P21212)
2bx4
homo-2-mer3243-3540
Assess
human SARS coronavirus unique domain (triclinic form)
2wct
homo-2-mer1207-1470
Assess
Nsp9 protein from SARS-coronavirus.
1uw7
homo-2-mer4118-4230
Assess
Crystal structure of SARS coronavirus NSP9
1qz8
homo-2-mer4120-4230
4×SO4;
Assess
A Special Dimerization of SARS-CoV Main Protease C-Terminal Domain Due to Domain-swapping
3ebn
homo-2-mer3438-3538
Assess
Delicate structural coordination of the Severe Acute Respiratory Syndrome coronavirus Nsp13 upon AT…
6jyt
monomer5302-5897
3×ZN;
Assess
Crystal Structure of C-terminus of the non-structural protein 2 from SARS coronavirus
7fac
monomer295-818
2×ZN;
Assess
SARS coronavirus papain-like protease: structure of a viral deubiquitinating enzyme
2fe8
monomer1541-1854
1×ZN; 3×BR; 1×SO4;
Assess
Crystal structure of the SARS CoV-1 Papain-like protease in complex with peptide inhibitor VIR251
7lfv
monomer1542-1853
1×ZN; 12×EDO; 2×SO4;
Assess
Crystal structure of the SARS CoV-1 Papain-like protease in complex with peptide inhibitor VIR250
7lfu
monomer1544-1852
Assess
Crystal structure of SARS-CoV main protease with authentic N and C-termini
2h2z
monomer3241-3546
Assess
Structure of SARS-3CL protease complex with a phenyl-beta-alanyl (R,S)-N-decalin type inhibitor
5c5n
monomer3241-3546
1×SLH;
Assess
Crystal Structure of a monomeric form of Severe Acute Respiratory Syndrome (SARS) 3C-like protease …
2qcy
monomer3241-3546
Assess
Structure of SARS-3CL protease complex with a phenylbenzoyl (R,S)-N-decalin type inhibitor
4wy3
monomer3241-3546
1×3X5;
Assess
Crystal structure of SARS coronavirus 3CL protease inhibitor complex
2gx4
monomer3241-3546
1×NOL;
Assess
Complex structure of SARS-CoV 3CL protease with TG-0204998
2zu4
monomer3241-3546
1×ZU3;
Assess
The co-crystal structure of SARS-CoV 3C Like Protease with aldehyde inhibitor M7
6lnq
monomer3241-3546
1×EJF;
Assess
SARS-CoV main protease monomeric Arg298Ala mutant with N-terminal additional residues (Gly-Ser)
3m3t
monomer3241-3545
Assess
Crystal structure of native SARS CLpro
1z1i
monomer3241-3541
Assess
Structure of SARS-3CL protease complex with a phenyl-beta-alanyl (S,R)-N-decalin type inhibitor
5c5o
monomer3241-3540
1×SDJ;
Assess
Crystal structure of G11A mutant of SARS-CoV 3C-like protease
2pwx
monomer3244-3539
Assess
Crystal Structure of N-terminus of the non-structural protein 2 from SARS coronavirus
7fa1
monomer181-456
3×ZN;
Assess
Crystal Structure of SARS-Unique Domain (SUD) of Nsp3 from SARS coronavirus
8ufl
monomer1207-1469
9×CL; 5×SO4;
Assess
Crystal Structure of L516C/Y647C Mutant of SARS-Unique Domain (SUD) from SARS-CoV-2
8ufm
monomer1207-1465
1×FMT; 1×ACT; 7×SO4;
Assess
SARS-CoV Macro domain complexed with 3-(N-morpholino)propanesulfonic acid
8cb3
monomer1001-1173
Assess
Crystal structure of SARS macro domain in complex with ADP-ribose at 1.8 A resolution
2fav
monomer1001-1172
Assess
NMR STRUCTURE OF SARS-COV NON-STRUCTURAL PROTEIN NSP3A (SARS1) FROM SARS CORONAVIRUS
2acf
monomer1002-1169
2×GOL;
Assess
NMR structure of the domain 513-651 of the SARS-CoV nonstructural protein nsp3
2rnk
monomer1331-1469
Assess
NMR Conformer closest to the mean coordinates of the domain 513-651 of the SARS-CoV nonstructural p…
2jzf
monomer1331-1469
Assess
NMR structure of the domain 527-651 of the SARS-CoV nonstructural protein nsp3, single conformer cl…
2jze
monomer1345-1469
Assess
NMR structure of the domain 527-651 of the SARS-CoV nonstructural protein nsp3
2jzd
monomer1345-1469
Assess
solution structure of C-terminal domain of SARS-CoV main protease
2k7x
monomer3427-3546
Assess
NMR Structure of the nonstructural protein 1 (nsp1) from the SARS coronavirus
2hsx
monomer12-127
Assess
NMR Structure of the nonstructural protein 1 (nsp1) from the SARS coronavirus
2gdt
monomer12-127
Assess
NMR Structure of the SARS-CoV non-structural protein nsp3a
2idy
monomer819-930
Assess
NMR Structure of the SARS-CoV non-structural protein nsp3a
2gri
monomer819-930
Assess
NMR Structure of the nonstructural Protein 7 (nsP7) from the SARS CoronaVirus
1ysy
monomer3837-3919
Assess

9 SWISS-MODEL models

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
7dte.1.Amonomer0.774371-5298
2×ZN;96.35
Assess
7fac.1.Amonomer0.76295-818
2×ZN;100.00
Assess
6nur.1.Amonomer0.764486-5288
2×ZN;100.00
Assess
7kf4.1.Dmonomer0.746430-6775
88.73
Assess
7msw.1.Amonomer0.73184-818
2×ZN;68.34
Assess
7n0d.1.Dmonomer0.705905-6425
3×ZN; 1×MG;94.86
Assess
7r2v.1.Amonomer0.685927-6426
1×SAH; 4×ZN;94.47
Assess
6jyt.1.Amonomer0.655302-5897
3×ZN;100.00
Assess
5wwp.2.Amonomer0.635302-5891
3×ZN;72.20
Assess