O15514 (RPB4_HUMAN) Homo sapiens (Human)

DNA-directed RNA polymerase II subunit RPB4 UniProtKBInterProSTRINGInteractive Modelling

142 aa; Sequence (Fasta) ; 63 identical sequences

Available Structures

50 Experimental Structures

DescriptionPDB IDOligo-stateRangeSeq id (%)Ligands
Subunits Rpb4 and Rpb7 of human RNA polymerase II Heteromer
P62487;
14-142
100
Human holo-PIC in the initial transcribing state Heteromer
P13984; P18074; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;
14-142
100MG; 11×ZN;
Structural insights into human co-transcriptional capping - structure 5 Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; O60942; P11414; P60899; Q8N1G2;
14-142
100MG;ZN;
Human holo-PIC in the initial transcribing state (no IIS) Heteromer
P13984; P18074; P19387; P19388; P19447; P20226; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;
14-142
100MG; 10×ZN;
Human core-PIC in the open state Heteromer
P13984; P19387; P19388; P20226; P23193; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403;
14-142
100MG; 11×ZN;
Human holo-PIC in the closed state Heteromer
P13984; P18074; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;
14-142
100MG; 11×ZN;
Human holo-PIC in the open state Heteromer
P13984; P18074; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;
14-142
100MG; 11×ZN;
Human core-PIC in the initial transcribing state Heteromer
P13984; P19387; P19388; P20226; P23193; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403;
14-142
100MG; 11×ZN;
Structural insights into human co-transcriptional capping - structure 1 Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A7M4DUC2; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O60942; P60899;
14-142
100MG;ZN;
human co-transcriptional RNA capping enzyme RNGTT-CMTR1 Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; O60942; P60899; P63272; Q8N1G2;
14-142
100MG;ZN;GTP;
Structure of the human Mediator-bound transcription pre-initiation complex Heteromer
A0JLT2; O43513; O60244; O75448; O75586; P13984; P18074; P19387; P19388; P19447; P20226; P24928; P29083; P29084; P30876; P32780; P35269; P36954; P50613; P51946; P51948; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13503; Q13888; Q13889; Q15528; Q6P2C8; Q6ZYL4; Q71SY5; Q92759; Q96G25; Q96HR3; Q96RN5; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9NX70; Q9P086; Q9ULK4; Q9Y2X0; Q9Y3C7;
14-142
100MG; 16×ZN;SF4;
Human core-PIC in the initial transcribing state (no IIS) Heteromer
P13984; P19387; P19388; P20226; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403;
14-142
100MG; 11×ZN;
Structure of the p53/RNA polymerase II assembly Heteromer
P04637; P19387; P19388; P24928; P30876; P36954; P52434; P52435; P53803; P61218; P62487; P62875;
14-142
100MG;ZN;
Human holo-PIC in the closed state Heteromer
P13984; P18074; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P32780; P35269; P36954; P50613; P51946; P51948; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;
14-142
100MG; 17×ZN;SF4;
Human core-PIC in the closed state Heteromer
P13984; P19387; P19388; P20226; P23193; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403;
14-142
100MG; 11×ZN;
Structure of transcribing complex 9 (TC9), the initially transcribing complex with Pol II positione… Heteromer
A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
14-141
10017×ZN;SF4;MG;W0F;
Structure of transcribing complex 5 (TC5), the initially transcribing complex with Pol II positione… Heteromer
A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
14-141
10017×ZN;SF4;MG;W0F;
Structure of transcribing complex 8 (TC8), the initially transcribing complex with Pol II positione… Heteromer
A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
14-141
10017×ZN;SF4;MG;W0F;
Structure of transcribing complex 6 (TC6), the initially transcribing complex with Pol II positione… Heteromer
A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
14-141
10017×ZN;SF4;MG;W0F;
De novo transcribing complex 16 (TC16), the early elongation complex with Pol II positioned 16nt do… Heteromer
A0A481BYI6; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P35269; P60899; P85421;
14-141
100ZN;MG;W0F;
human co-transcriptional RNA capping enzyme RNGTT Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; O60942; P18615; P60899; P63272; Q8IXH7; Q8WX92; Q9H3P2;
14-141
100MG;ZN;GTP;
Pol II-CSB-CSA-DDB1-ELOF1 Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1B522; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P60899; Q03468; Q13216; Q16531;
14-141
100ZN;MG;
Structural insights into human co-transcriptional capping - structure 6 Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A4X1VYD0; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P60899; P63272; Q8N1G2;
14-141
100MGT;ZN;MG;SAM;
Structure of mammalian Pol II-TFIIS elongation complex Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A7M4DUC2; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P23193; P60899;
14-141
10011×ZN;MG;
RNA Pol II(G) Heteromer
P0CAP2; P19387; P19388; P24928; P30876; P36954; P52434; P52435; P53803; P61218; P62487; P62875;
14-141
100ZN;
Structure of transcribing complex 3 (TC3), the initially transcribing complex with Pol II positione… Heteromer
A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
14-141
10017×ZN;SF4;W0F;MG;
Structure of transcribing complex 4 (TC4), the initially transcribing complex with Pol II positione… Heteromer
A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
14-141
10017×ZN;SF4;MG;W0F;
Structure of the Pol II-TCR-ELOF1 complex. Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1B522; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P60899; Q03468; Q13216; Q16531; Q2YD98;
14-141
10010×ZN;MG;ADP;BEF;
Structure of transcribing complex 2 (TC2), the initially transcribing complex with Pol II positione… Heteromer
A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
14-141
10017×ZN;SF4;W0F;MG;
Structure of transcribing complex 7 (TC7), the initially transcribing complex with Pol II positione… Heteromer
A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
14-141
10017×ZN;SF4;MG;W0F;
Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 4) Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VM56; A0A4X1VYD0; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P11414; P60899; P62878; Q03468; Q13216; Q13619; Q16531; Q2YD98; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q9GZS3;
14-141
100ZN;MG;
TFIID-based holo PIC on SCP promoter Heteromer
A0A481BYI6; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P24928; P29083; P29084; P32780; P35269; P49848; P50613; P51946; P51948; P52655; P52657; P60899; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
14-141
10017×ZN;SF4;MG;
p53-bound TFIID-based holo PIC on HDM2 promoter Heteromer
A0A481BYI6; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P24928; P29083; P29084; P32780; P35269; P49848; P50613; P51946; P51948; P52655; P52657; P60899; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
14-141
10016×ZN;SF4;MG;
De novo transcribing complex 12 (TC12), the early elongation complex with Pol II positioned 12nt do… Heteromer
A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D0JYF1; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P35269; P60899; P85421;
14-141
100ZN;MG;W0F;
De novo transcribing complex 10 (TC10), the early elongation complex with Pol II positioned 10nt do… Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P35269; P60899; P85421;
14-141
100ZN;MG;W0F;
Structure of Pol II-TC-NER-STK19 complex Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A4X1VYD0; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P49842; P60002; P60899; Q03468; Q13216; Q16531; Q2YD98; Q9BW61;
14-141
10010×ZN;MG;
De novo transcribing complex 13 (TC13), the early elongation complex with Pol II positioned 13nt do… Heteromer
A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D0JYF1; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P35269; P60899; P85421;
14-141
100ZN;MG;W0F;
De novo transcribing complex 15 (TC15), the early elongation complex with Pol II positioned 15nt do… Heteromer
A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D0JYF1; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P35269; P60899; P85421;
14-141
100ZN;MG;W0F;
De novo transcribing complex 11 (TC11), the early elongation complex with Pol II positioned 11nt do… Heteromer
A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D0JYF1; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P35269; P60899; P85421;
14-141
100W0F;ZN;MG;
De novo transcribing complex 17 (TC17), the early elongation complex with Pol II positioned 17nt do… Heteromer
A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D0JYF1; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P35269; P60899; P85421;
14-141
100ZN;MG;W0F;
De novo transcribing complex 14 (TC14), the early elongation complex with Pol II positioned 14nt do… Heteromer
A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D0JYF1; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P35269; P60899; P85421;
14-141
100ZN;MG;W0F;
The structure of INTAC-PEC complex Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P18615; P24928; P30153; P60899; P63272; P67775; Q5TA45; Q6P9B9; Q75QN2; Q8IXH7; Q8N201; Q8WX92; Q96HW7; Q9H0H0; Q9H3P2; Q9NV88; Q9NVH2; Q9UL03;
14-141
10010×ZN;MN;MG;
Structural insights into human co-transcriptional capping - structure 2 Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O60942; P60899;
14-139
100ZN;MG;
Structure of paused transcription complex Pol II-DSIF-NELF - tilted Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P18615; P60899; P63272; Q8IXH7; Q8WX92; Q9H3P2;
14-139
100ZN;MG;
Structural insights into human co-transcriptional capping - structure 3 Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; O60942; P60899; P63272;
14-139
100ZN;MG;
Structural insights into human co-transcriptional capping - structure 4 Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; O60942; P60899; P63272;
14-139
100ZN;
Pol II-CSB-CSA-DDB1-UVSSA-ADPBeF3 (Structure2) Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VM56; A0A4X1VYD0; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P11414; P60899; Q03468; Q13216; Q16531;
14-139
100ZN;MG;ADP;BEF;
Structure of transcription complex Pol II-DSIF-NELF-TFIIS Heteromer
A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D0JYF1; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P23193; P60899; Q8IXH7; Q9H3P2;
16-139
100ZN;MG;
Structure of poised transcription complex Pol II-DSIF-NELF - pre-translocated Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P18615; P60899; Q8IXH7; Q8WX92; Q9H3P2;
16-139
100ZN;MG;
Structure of paused transcription complex Pol II-DSIF-NELF - poised post-translocated Heteromer
A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P18615; P60899; Q8IXH7; Q8WX92; Q9H3P2;
16-139
100ZN;MG;

1 SWISS-MODEL model

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
8p4d.1.Nmonomer0.7914-139
100.00