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SMTL ID : 1bpz.1

HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x DG- DT- DC- DG- DG: DNA (5'-D(*GP*TP*CP*GP*G)-3')(Non-covalent)

DG-DT-DC-DG-DG.1:

20 residues within 4Å:

Chain A: C.1, C.2, G.3, A.4, C.5
Chain C: H.34, K.35, A.38, Y.39, K.41, L.62, P.63, G.64, V.65, G.66, T.67, K.68, I.69, K.72
Ligands: NA.3

1 PLIP interactions:

1 interactions with chain C

pi-Stacking: C:H.34

2 x NA: SODIUM ION(Non-functional Binders)

NA.2:	4 residues within 4Å: Chain B: G.9 Chain C: T.101, V.103, I.106 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.101, C:I.106
NA.3:	4 residues within 4Å: Chain C: K.60, L.62, V.65 Ligands: DG-DT-DC-DG-DG.1 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:V.65, C:V.65

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Sawaya, M.R. et al., Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism. Biochemistry (1997)

Release Date

1997-06-16

Peptides

PROTEIN (DNA POLYMERASE BETA): C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

PROTEIN (DNA POLYMERASE BETA)

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