- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 12 x MN: MANGANESE (II) ION(Non-covalent)
- 32 x K: POTASSIUM ION(Non-covalent)
K.3: 6 residues within 4Å:- Chain A: E.215, N.236, D.238, A.239, I.242, S.247
Ligand excluded by PLIPK.4: 6 residues within 4Å:- Chain A: A.126, E.127, E.299, M.300, N.301
- Ligands: MN.1
Ligand excluded by PLIPK.6: 4 residues within 4Å:- Chain A: E.841, N.843
- Ligands: MN.5, ADP.20
Ligand excluded by PLIPK.7: 6 residues within 4Å:- Chain A: E.761, H.781, E.783, Q.784, V.787, S.792
Ligand excluded by PLIPK.11: 7 residues within 4Å:- Chain A: E.217, T.244, N.283, Q.285, S.307
- Ligands: MN.2, PO4.14
Ligand excluded by PLIPK.12: 3 residues within 4Å:- Chain A: D.84, G.112, T.114
Ligand excluded by PLIPK.13: 3 residues within 4Å:- Chain A: T.143, A.144, R.145
Ligand excluded by PLIPK.23: 2 residues within 4Å:- Chain B: H.16, D.112
Ligand excluded by PLIPK.26: 6 residues within 4Å:- Chain C: E.215, N.236, D.238, A.239, I.242, S.247
Ligand excluded by PLIPK.27: 6 residues within 4Å:- Chain C: A.126, E.127, E.299, M.300, N.301
- Ligands: MN.24
Ligand excluded by PLIPK.29: 3 residues within 4Å:- Chain C: E.841, N.843
- Ligands: ADP.40
Ligand excluded by PLIPK.30: 6 residues within 4Å:- Chain C: E.761, H.781, E.783, Q.784, V.787, S.792
Ligand excluded by PLIPK.34: 6 residues within 4Å:- Chain C: E.217, T.244, N.283, Q.285
- Ligands: MN.25, PO4.37
Ligand excluded by PLIPK.35: 3 residues within 4Å:- Chain C: D.84, G.112, T.114
Ligand excluded by PLIPK.36: 3 residues within 4Å:- Chain C: T.143, A.144, R.145
Ligand excluded by PLIPK.43: 2 residues within 4Å:- Chain D: H.16, D.112
Ligand excluded by PLIPK.44: 3 residues within 4Å:- Chain E: D.84, G.112, T.114
Ligand excluded by PLIPK.45: 2 residues within 4Å:- Chain E: T.143, A.144
Ligand excluded by PLIPK.48: 6 residues within 4Å:- Chain E: E.215, N.236, D.238, A.239, I.242, S.247
Ligand excluded by PLIPK.49: 6 residues within 4Å:- Chain E: A.126, E.127, E.299, M.300, N.301
- Ligands: MN.46
Ligand excluded by PLIPK.51: 5 residues within 4Å:- Chain E: E.841, N.843, R.845
- Ligands: MN.50, ADP.60
Ligand excluded by PLIPK.52: 6 residues within 4Å:- Chain E: E.761, H.781, E.783, Q.784, V.787, S.792
Ligand excluded by PLIPK.56: 6 residues within 4Å:- Chain E: E.217, T.244, N.283, Q.285
- Ligands: MN.47, PO4.57
Ligand excluded by PLIPK.63: 2 residues within 4Å:- Chain F: H.16, D.112
Ligand excluded by PLIPK.66: 6 residues within 4Å:- Chain G: E.215, N.236, D.238, A.239, I.242, S.247
Ligand excluded by PLIPK.67: 6 residues within 4Å:- Chain G: A.126, E.127, E.299, M.300, N.301
- Ligands: MN.64
Ligand excluded by PLIPK.69: 3 residues within 4Å:- Chain G: E.841, N.843
- Ligands: ADP.79
Ligand excluded by PLIPK.70: 6 residues within 4Å:- Chain G: E.761, H.781, E.783, Q.784, V.787, S.792
Ligand excluded by PLIPK.74: 7 residues within 4Å:- Chain G: E.217, T.244, N.283, Q.285, N.301
- Ligands: MN.65, PO4.77
Ligand excluded by PLIPK.75: 3 residues within 4Å:- Chain G: D.84, G.112, T.114
Ligand excluded by PLIPK.76: 3 residues within 4Å:- Chain G: T.143, A.144, R.145
Ligand excluded by PLIPK.82: 2 residues within 4Å:- Chain H: H.16, D.112
Ligand excluded by PLIP- 16 x CL: CHLORIDE ION(Non-functional Binders)
CL.8: 3 residues within 4Å:- Chain A: Q.93, T.173, M.174
Ligand excluded by PLIPCL.9: 3 residues within 4Å:- Chain A: N.289, N.292, R.294
Ligand excluded by PLIPCL.10: 5 residues within 4Å:- Chain A: A.370, N.371, F.900, P.901, G.902
Ligand excluded by PLIPCL.22: 4 residues within 4Å:- Chain A: E.549
- Chain B: F.15, I.113, D.114
Ligand excluded by PLIPCL.31: 3 residues within 4Å:- Chain C: Q.93, T.173, M.174
Ligand excluded by PLIPCL.32: 3 residues within 4Å:- Chain C: N.289, N.292, R.294
Ligand excluded by PLIPCL.33: 5 residues within 4Å:- Chain C: A.370, N.371, F.900, P.901, G.902
Ligand excluded by PLIPCL.42: 4 residues within 4Å:- Chain C: E.549
- Chain D: F.15, I.113, D.114
Ligand excluded by PLIPCL.53: 5 residues within 4Å:- Chain E: Q.93, T.173, M.174, S.177
- Ligands: NET.61
Ligand excluded by PLIPCL.54: 4 residues within 4Å:- Chain E: W.213, N.289, N.292, R.294
Ligand excluded by PLIPCL.55: 5 residues within 4Å:- Chain E: A.370, N.371, F.900, P.901, G.902
Ligand excluded by PLIPCL.62: 4 residues within 4Å:- Chain E: E.549
- Chain F: F.15, I.113, D.114
Ligand excluded by PLIPCL.71: 4 residues within 4Å:- Chain G: Q.93, T.173, M.174, S.177
Ligand excluded by PLIPCL.72: 3 residues within 4Å:- Chain G: N.289, N.292, R.294
Ligand excluded by PLIPCL.73: 5 residues within 4Å:- Chain G: A.370, N.371, F.900, P.901, G.902
Ligand excluded by PLIPCL.81: 4 residues within 4Å:- Chain G: E.549
- Chain H: F.15, I.113, D.114
Ligand excluded by PLIP- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.14: 12 residues within 4Å:- Chain A: M.174, G.175, H.243, Q.285, E.299, N.301, R.303, R.306
- Ligands: MN.1, MN.2, K.11, ADP.19
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:G.175, A:N.301, A:N.301
- Water bridges: A:Q.285, A:R.303, A:R.306
- Salt bridges: A:H.243, A:R.303, A:R.306
PO4.37: 12 residues within 4Å:- Chain C: M.174, G.175, H.243, Q.285, E.299, N.301, R.303, R.306
- Ligands: MN.24, MN.25, K.34, ADP.39
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:G.175, C:N.301
- Water bridges: C:S.305, C:R.306
- Salt bridges: C:H.243, C:R.303, C:R.306
PO4.38: 1 residues within 4Å:- Chain C: D.518
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:Q.519
PO4.57: 12 residues within 4Å:- Chain E: M.174, G.175, H.243, Q.285, E.299, N.301, R.303, R.306
- Ligands: MN.46, MN.47, K.56, ADP.59
9 PLIP interactions:9 interactions with chain E- Hydrogen bonds: E:G.175, E:N.301, E:N.301
- Water bridges: E:Q.285, E:R.303, E:S.305
- Salt bridges: E:H.243, E:R.303, E:R.306
PO4.58: 4 residues within 4Å:- Chain E: E.560, D.592, G.593, Y.594
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:G.593
PO4.77: 12 residues within 4Å:- Chain G: M.174, G.175, H.243, Q.285, E.299, N.301, R.303, R.306
- Ligands: MN.64, MN.65, K.74, ADP.78
11 PLIP interactions:11 interactions with chain G- Hydrogen bonds: G:G.175, G:E.299, G:N.301, G:N.301
- Water bridges: G:Q.285, G:R.303, G:R.306, G:R.306
- Salt bridges: G:H.243, G:R.303, G:R.306
- 4 x ORN: L-ornithine(Non-covalent)
ORN.15: 11 residues within 4Å:- Chain A: E.783, D.791, S.792, A.793, E.892, V.893, L.895, L.907, Y.1040, D.1041, T.1042
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.895
- Hydrogen bonds: A:D.791, A:A.793, A:D.1041, A:D.1041, A:T.1042
- Water bridges: A:T.1043
ORN.16: 10 residues within 4Å:- Chain C: E.783, D.791, S.792, A.793, E.892, V.893, L.907, Y.1040, D.1041, T.1042
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:L.907
- Hydrogen bonds: C:E.783, C:A.793, C:D.1041, C:T.1042
ORN.17: 10 residues within 4Å:- Chain E: E.783, D.791, A.793, E.892, V.893, L.895, L.907, Y.1040, D.1041, T.1042
7 PLIP interactions:7 interactions with chain E- Hydrophobic interactions: E:L.895
- Hydrogen bonds: E:E.783, E:A.793, E:D.1041, E:D.1041, E:T.1042
- Water bridges: E:H.1039
ORN.18: 10 residues within 4Å:- Chain G: E.783, D.791, A.793, E.892, V.893, L.895, L.907, Y.1040, D.1041, T.1042
7 PLIP interactions:7 interactions with chain G- Hydrophobic interactions: G:L.895
- Hydrogen bonds: G:D.791, G:A.793, G:D.1041, G:T.1042
- Water bridges: G:E.783, G:Y.1040
- 8 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.19: 26 residues within 4Å:- Chain A: R.129, A.144, I.167, R.169, T.173, M.174, G.175, G.176, D.207, E.208, S.209, L.210, I.211, E.215, M.240, G.241, I.242, H.243, T.244, Q.285, I.298, E.299, T.376
- Ligands: MN.1, MN.2, PO4.14
18 PLIP interactions:18 interactions with chain A- Hydrogen bonds: A:M.174, A:G.175, A:G.176, A:E.208, A:L.210, A:E.215, A:G.241, A:I.242, A:T.244, A:Q.285, A:Q.285, A:E.299
- Water bridges: A:R.129, A:R.129
- Salt bridges: A:R.129, A:R.129, A:R.169, A:H.243
ADP.20: 19 residues within 4Å:- Chain A: P.690, V.713, R.715, M.725, H.754, F.755, L.756, E.761, A.785, G.786, V.787, H.788, S.789, Q.829, I.840, E.841, P.909
- Ligands: MN.5, K.6
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:R.715, A:R.715, A:H.754, A:L.756, A:E.761, A:G.786, A:S.789, A:S.789
- Water bridges: A:Q.829, A:Q.829, A:Q.829
- Salt bridges: A:R.715, A:H.788
ADP.39: 25 residues within 4Å:- Chain C: R.129, I.167, R.169, T.173, M.174, G.175, G.176, D.207, E.208, S.209, L.210, I.211, E.215, M.240, G.241, I.242, H.243, T.244, Q.285, I.298, E.299, T.376
- Ligands: MN.24, MN.25, PO4.37
18 PLIP interactions:18 interactions with chain C- Hydrogen bonds: C:T.173, C:G.175, C:G.176, C:E.208, C:L.210, C:E.215, C:G.241, C:I.242, C:T.244, C:Q.285, C:E.299
- Water bridges: C:R.129, C:R.129, C:H.243
- Salt bridges: C:R.129, C:R.129, C:R.169, C:H.243
ADP.40: 18 residues within 4Å:- Chain C: P.690, R.715, M.725, H.754, F.755, L.756, E.761, A.785, G.786, V.787, H.788, S.789, Q.829, I.840, E.841, P.909
- Ligands: MN.28, K.29
16 PLIP interactions:16 interactions with chain C- Hydrogen bonds: C:R.715, C:R.715, C:H.754, C:L.756, C:E.761, C:G.786, C:S.789, C:Q.829, C:E.841
- Water bridges: C:H.788, C:Q.829, C:Q.829, C:Q.829, C:Q.829
- Salt bridges: C:R.715, C:H.788
ADP.59: 25 residues within 4Å:- Chain E: R.129, I.167, R.169, T.173, M.174, G.175, G.176, D.207, E.208, S.209, L.210, I.211, E.215, M.240, G.241, I.242, H.243, T.244, Q.285, I.298, E.299, T.376
- Ligands: MN.46, MN.47, PO4.57
17 PLIP interactions:17 interactions with chain E- Hydrogen bonds: E:M.174, E:G.175, E:G.176, E:E.208, E:L.210, E:E.215, E:G.241, E:T.244, E:Q.285, E:Q.285, E:E.299
- Water bridges: E:R.129, E:R.129
- Salt bridges: E:R.129, E:R.129, E:R.169, E:H.243
ADP.60: 18 residues within 4Å:- Chain E: P.690, V.713, R.715, M.725, H.754, F.755, L.756, E.761, A.785, G.786, V.787, H.788, S.789, Q.829, I.840, E.841
- Ligands: MN.50, K.51
12 PLIP interactions:12 interactions with chain E- Hydrogen bonds: E:R.715, E:H.754, E:L.756, E:E.761, E:G.786, E:S.789, E:S.789
- Water bridges: E:R.715, E:Q.829, E:R.848
- Salt bridges: E:R.715, E:H.788
ADP.78: 25 residues within 4Å:- Chain G: R.129, I.167, R.169, T.173, M.174, G.175, G.176, D.207, E.208, S.209, L.210, I.211, E.215, M.240, G.241, I.242, H.243, T.244, Q.285, I.298, E.299, T.376
- Ligands: MN.64, MN.65, PO4.77
19 PLIP interactions:19 interactions with chain G- Hydrogen bonds: G:T.173, G:M.174, G:G.175, G:G.176, G:E.208, G:L.210, G:E.215, G:G.241, G:T.244, G:Q.285, G:E.299
- Water bridges: G:T.173, G:T.173, G:H.243, G:H.243
- Salt bridges: G:R.129, G:R.129, G:R.169, G:H.243
ADP.79: 18 residues within 4Å:- Chain G: P.690, R.715, M.725, H.754, F.755, L.756, E.761, A.785, G.786, V.787, H.788, S.789, Q.829, I.840, E.841, P.909
- Ligands: MN.68, K.69
10 PLIP interactions:10 interactions with chain G- Hydrogen bonds: G:R.715, G:H.754, G:L.756, G:E.761, G:G.786, G:S.789, G:S.789, G:E.841
- Salt bridges: G:R.715, G:H.788
- 4 x NET: TETRAETHYLAMMONIUM ION(Non-covalent)
NET.21: 6 residues within 4Å:- Chain A: V.19, Q.22, Q.93, T.94, N.97, N.936
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.19, A:Q.93
NET.41: 5 residues within 4Å:- Chain C: V.19, Q.22, T.94, N.97, N.936
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:V.19
NET.61: 6 residues within 4Å:- Chain E: Q.22, Q.93, T.94, N.97, N.936
- Ligands: CL.53
1 PLIP interactions:1 interactions with chain E- Hydrophobic interactions: E:Q.93
NET.80: 6 residues within 4Å:- Chain G: V.19, Q.22, Q.93, T.94, N.97, N.936
2 PLIP interactions:2 interactions with chain G- Hydrophobic interactions: G:V.19, G:Q.93
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., The small subunit of carbamoyl phosphate synthetase: snapshots along the reaction pathway. Biochemistry (1999)
- Release Date
- 1999-12-10
- Peptides
- CARBAMOYL PHOSPHATE SYNTHETASE: LARGE SUBUNIT: ACEG
CARBAMOYL PHOSPHATE SYNTHETASE: SMALL SUBUNIT: BDFH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
EG
GB
BD
DF
FH
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 12 x MN: MANGANESE (II) ION(Non-covalent)
- 32 x K: POTASSIUM ION(Non-covalent)
- 16 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x ORN: L-ornithine(Non-covalent)
- 8 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x NET: TETRAETHYLAMMONIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., The small subunit of carbamoyl phosphate synthetase: snapshots along the reaction pathway. Biochemistry (1999)
- Release Date
- 1999-12-10
- Peptides
- CARBAMOYL PHOSPHATE SYNTHETASE: LARGE SUBUNIT: ACEG
CARBAMOYL PHOSPHATE SYNTHETASE: SMALL SUBUNIT: BDFH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
EG
GB
BD
DF
FH
H