- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 3 x MN: MANGANESE (II) ION(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
K.3: 6 residues within 4Å:- Chain A: E.215, N.236, D.238, A.239, I.242, S.247
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.215, A:D.238, A:A.239, A:I.242, A:S.247
K.4: 6 residues within 4Å:- Chain A: A.126, E.127, E.299, M.300, N.301
- Ligands: MN.1
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.127, A:E.299, A:M.300, H2O.5, H2O.23
K.6: 3 residues within 4Å:- Chain A: E.841, N.843
- Ligands: ADP.18
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.841, A:E.841
K.7: 6 residues within 4Å:- Chain A: E.761, H.781, E.783, Q.784, V.787, S.792
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.761, A:H.781, A:Q.784, A:V.787, A:S.792
K.8: 3 residues within 4Å:- Chain A: T.143, A.144, R.145
No protein-ligand interaction detected (PLIP)K.9: 6 residues within 4Å:- Chain A: G.382, E.383, P.569, N.570, N.602, E.604
No protein-ligand interaction detected (PLIP)K.10: 3 residues within 4Å:- Chain A: D.84, G.112, T.114
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:T.114, H2O.1
K.21: 2 residues within 4Å:- Chain B: H.16, D.112
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.16, B:D.112, H2O.16
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.11: 4 residues within 4Å:- Chain A: Q.93, T.173, M.174
- Ligands: NET.20
Ligand excluded by PLIPCL.12: 4 residues within 4Å:- Chain A: W.213, N.289, N.292, R.294
Ligand excluded by PLIPCL.13: 5 residues within 4Å:- Chain A: A.370, N.371, F.900, P.901, G.902
Ligand excluded by PLIPCL.14: 3 residues within 4Å:- Chain A: K.475, N.485, F.488
Ligand excluded by PLIPCL.15: 4 residues within 4Å:- Chain A: F.578, R.845, A.847, R.848
Ligand excluded by PLIPCL.22: 4 residues within 4Å:- Chain A: E.549
- Chain B: F.15, I.113, D.114
Ligand excluded by PLIP- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.16: 11 residues within 4Å:- Chain A: M.174, G.175, H.243, Q.285, E.299, N.301, R.303, R.306
- Ligands: MN.1, MN.2, ADP.17
12 PLIP interactions:12 interactions with chain A- Hydrogen bonds: A:G.175, A:E.299, A:N.301
- Water bridges: A:T.244, A:T.244, A:Q.285, A:R.303, A:R.306, A:R.306
- Salt bridges: A:H.243, A:R.303, A:R.306
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.17: 25 residues within 4Å:- Chain A: R.129, I.167, R.169, T.173, M.174, G.175, G.176, D.207, E.208, S.209, L.210, I.211, E.215, M.240, G.241, I.242, H.243, T.244, Q.285, I.298, E.299, T.376
- Ligands: MN.1, MN.2, PO4.16
18 PLIP interactions:18 interactions with chain A- Hydrogen bonds: A:T.173, A:G.175, A:G.176, A:E.208, A:L.210, A:E.215, A:G.241, A:T.244, A:Q.285, A:E.299
- Water bridges: A:R.129, A:T.173, A:H.243, A:H.243
- Salt bridges: A:R.129, A:R.129, A:R.169, A:H.243
ADP.18: 19 residues within 4Å:- Chain A: P.690, V.713, R.715, M.725, H.754, F.755, L.756, E.761, A.785, G.786, V.787, H.788, S.789, Q.829, I.840, E.841, P.909
- Ligands: MN.5, K.6
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:R.715, A:R.715, A:H.754, A:L.756, A:E.761, A:G.786, A:S.789, A:S.789, A:E.841
- Water bridges: A:H.788, A:Q.829, A:Q.829, A:Q.829
- Salt bridges: A:R.715, A:H.788
- 1 x ORN: L-ornithine(Non-covalent)
- 1 x NET: TETRAETHYLAMMONIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Miles, B.W. et al., Inactivation of the amidotransferase activity of carbamoyl phosphate synthetase by the antibiotic acivicin. J.Biol.Chem. (2002)
- Release Date
- 2001-12-21
- Peptides
- Carbamoyl-phosphate synthetase large chain: A
Carbamoyl-phosphate synthetase small chain: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 3 x MN: MANGANESE (II) ION(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 1 x ORN: L-ornithine(Non-covalent)
- 1 x NET: TETRAETHYLAMMONIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Miles, B.W. et al., Inactivation of the amidotransferase activity of carbamoyl phosphate synthetase by the antibiotic acivicin. J.Biol.Chem. (2002)
- Release Date
- 2001-12-21
- Peptides
- Carbamoyl-phosphate synthetase large chain: A
Carbamoyl-phosphate synthetase small chain: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D