- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 3 x MN: MANGANESE (II) ION(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
K.3: 6 residues within 4Å:- Chain A: E.215, N.236, D.238, A.239, I.242, S.247
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.215, A:D.238, A:A.239, A:I.242, A:S.247
K.4: 6 residues within 4Å:- Chain A: A.126, E.127, E.299, M.300, N.301
- Ligands: MN.1
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.299, A:M.300
K.6: 4 residues within 4Å:- Chain A: E.841, N.843
- Ligands: MN.5, ADP.20
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.841, A:E.841
K.7: 6 residues within 4Å:- Chain A: E.761, H.781, E.783, Q.784, V.787, S.792
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.761, A:H.781, A:E.783, A:Q.784, A:S.792
K.11: 7 residues within 4Å:- Chain A: E.217, T.244, N.283, Q.285, S.307
- Ligands: MN.2, PO4.14
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.217, H2O.3
K.12: 3 residues within 4Å:- Chain A: D.84, G.112, T.114
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.84, A:G.112, A:T.114, H2O.4
K.13: 3 residues within 4Å:- Chain A: T.143, A.144, R.145
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:T.143, A:A.144, H2O.7, H2O.7
K.23: 2 residues within 4Å:- Chain B: H.16, D.112
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:H.16, B:D.112, H2O.20, H2O.34, H2O.34
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.8: 3 residues within 4Å:- Chain A: Q.93, T.173, M.174
Ligand excluded by PLIPCL.9: 3 residues within 4Å:- Chain A: N.289, N.292, R.294
Ligand excluded by PLIPCL.10: 5 residues within 4Å:- Chain A: A.370, N.371, F.900, P.901, G.902
Ligand excluded by PLIPCL.22: 4 residues within 4Å:- Chain A: E.549
- Chain B: F.15, I.113, D.114
Ligand excluded by PLIP- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x ORN: L-ornithine(Non-covalent)(Non-functional Binders)
ORN.15: 11 residues within 4Å:- Chain A: E.783, D.791, S.792, A.793, E.892, V.893, L.895, L.907, Y.1040, D.1041, T.1042
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.895
- Hydrogen bonds: A:D.791, A:A.793, A:D.1041, A:D.1041, A:T.1042
- Water bridges: A:T.1043
ORN.16: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)ORN.17: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)ORN.18: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.19: 26 residues within 4Å:- Chain A: R.129, A.144, I.167, R.169, T.173, M.174, G.175, G.176, D.207, E.208, S.209, L.210, I.211, E.215, M.240, G.241, I.242, H.243, T.244, Q.285, I.298, E.299, T.376
- Ligands: MN.1, MN.2, PO4.14
20 PLIP interactions:20 interactions with chain A- Hydrogen bonds: A:M.174, A:G.175, A:G.176, A:E.208, A:L.210, A:E.215, A:G.241, A:I.242, A:T.244, A:Q.285, A:E.299, A:N.301
- Water bridges: A:R.129, A:R.129, A:T.244, A:Q.285
- Salt bridges: A:R.129, A:R.129, A:R.169, A:H.243
ADP.20: 19 residues within 4Å:- Chain A: P.690, V.713, R.715, M.725, H.754, F.755, L.756, E.761, A.785, G.786, V.787, H.788, S.789, Q.829, I.840, E.841, P.909
- Ligands: MN.5, K.6
16 PLIP interactions:16 interactions with chain A- Hydrogen bonds: A:R.715, A:R.715, A:H.754, A:L.756, A:E.761, A:G.786, A:S.789, A:S.789, A:E.841
- Water bridges: A:H.788, A:Q.829, A:Q.829, A:Q.829, A:N.843
- Salt bridges: A:R.715, A:H.788
- 1 x NET: TETRAETHYLAMMONIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., The small subunit of carbamoyl phosphate synthetase: snapshots along the reaction pathway. Biochemistry (1999)
- Release Date
- 1999-12-10
- Peptides
- CARBAMOYL PHOSPHATE SYNTHETASE: LARGE SUBUNIT: A
CARBAMOYL PHOSPHATE SYNTHETASE: SMALL SUBUNIT: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 3 x MN: MANGANESE (II) ION(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x ORN: L-ornithine(Non-covalent)(Non-functional Binders)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 1 x NET: TETRAETHYLAMMONIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., The small subunit of carbamoyl phosphate synthetase: snapshots along the reaction pathway. Biochemistry (1999)
- Release Date
- 1999-12-10
- Peptides
- CARBAMOYL PHOSPHATE SYNTHETASE: LARGE SUBUNIT: A
CARBAMOYL PHOSPHATE SYNTHETASE: SMALL SUBUNIT: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B