- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
K.3: 6 residues within 4Å:- Chain A: E.215, N.236, D.238, A.239, I.242, S.247
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.215, A:D.238, A:A.239, A:I.242, A:S.247
K.4: 6 residues within 4Å:- Chain A: A.126, E.127, E.299, M.300, N.301
- Ligands: MN.1
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.127, A:E.299, A:M.300, H2O.1
K.5: 6 residues within 4Å:- Chain A: E.217, T.244, N.283, Q.285
- Ligands: MN.2, PO4.6
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.217, H2O.1
K.9: 6 residues within 4Å:- Chain A: E.761, H.781, E.783, Q.784, V.787, S.792
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.761, A:H.781, A:Q.784, A:V.787, A:S.792
K.11: 2 residues within 4Å:- Chain A: T.143, A.144
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:T.143, A:T.143, H2O.8, H2O.8
K.12: 5 residues within 4Å:- Chain A: A.672, E.673, E.841, V.842, N.843
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:V.842
K.13: 2 residues within 4Å:- Chain A: C.551, N.554
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:C.551, H2O.19
K.27: 2 residues within 4Å:- Chain B: H.16, D.112
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.16, B:D.112, H2O.40
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.6: 12 residues within 4Å:- Chain A: M.174, G.175, H.243, Q.285, E.299, N.301, R.303, R.306
- Ligands: MN.1, MN.2, K.5, ADP.23
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:G.175, A:N.301, A:N.301
- Water bridges: A:Q.285, A:R.303, A:S.305
- Salt bridges: A:H.243, A:R.303, A:R.306
PO4.10: 9 residues within 4Å:- Chain A: S.948, V.949, K.954, T.974, H.975, G.976, T.977, K.993
- Ligands: GLN.21
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:T.974, A:T.974, A:T.974, A:G.976, A:T.977, A:T.977
- Water bridges: A:K.954, A:K.954, A:K.993
- Salt bridges: A:K.954, A:K.993
PO4.20: 3 residues within 4Å:- Chain A: E.560, D.592, Y.594
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.593
- Water bridges: A:Y.594
- 7 x CL: CHLORIDE ION(Non-functional Binders)
CL.14: 3 residues within 4Å:- Chain A: N.289, N.292, R.294
Ligand excluded by PLIPCL.15: 5 residues within 4Å:- Chain A: A.370, N.371, F.900, P.901, G.902
Ligand excluded by PLIPCL.16: 5 residues within 4Å:- Chain A: Q.93, T.173, M.174, S.177
- Ligands: NET.26
Ligand excluded by PLIPCL.17: 1 residues within 4Å:- Chain A: W.71
Ligand excluded by PLIPCL.18: 3 residues within 4Å:- Chain A: K.475, N.485, F.488
Ligand excluded by PLIPCL.19: 4 residues within 4Å:- Chain A: F.578, R.845, A.847, R.848
Ligand excluded by PLIPCL.28: 3 residues within 4Å:- Chain B: F.15, I.113, D.114
Ligand excluded by PLIP- 2 x GLN: GLUTAMINE(Non-covalent)
GLN.21: 11 residues within 4Å:- Chain A: S.948, V.949, R.950, K.993, N.1015, T.1016, T.1017, D.1025, S.1026, I.1029
- Ligands: PO4.10
7 PLIP interactions:6 interactions with chain A, 1 Ligand-Ligand interactions- Hydrogen bonds: A:S.948, A:S.948, A:N.1015, A:T.1016, Q.21
- Water bridges: A:K.993, A:V.994
GLN.22: 8 residues within 4Å:- Chain A: R.528, A.537, T.538, D.539, E.552, N.554
- Chain B: R.120, R.123
12 PLIP interactions:6 interactions with chain B, 5 interactions with chain A, 1 Ligand-Ligand interactions- Water bridges: B:R.120, B:R.120, B:R.123, B:R.123, A:D.539, Q.22
- Salt bridges: B:R.120, B:R.123
- Hydrogen bonds: A:T.538, A:D.539, A:E.552, A:N.554
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.23: 25 residues within 4Å:- Chain A: R.129, I.167, R.169, T.173, M.174, G.175, G.176, D.207, E.208, S.209, L.210, I.211, E.215, M.240, G.241, I.242, H.243, T.244, Q.285, I.298, E.299, T.376
- Ligands: MN.1, MN.2, PO4.6
20 PLIP interactions:20 interactions with chain A- Hydrogen bonds: A:T.173, A:M.174, A:G.175, A:G.176, A:E.208, A:L.210, A:E.215, A:G.241, A:I.242, A:T.244, A:Q.285, A:E.299
- Water bridges: A:R.129, A:R.129, A:H.243, A:Q.285
- Salt bridges: A:R.129, A:R.129, A:R.169, A:H.243
ADP.24: 17 residues within 4Å:- Chain A: P.690, R.715, H.754, F.755, L.756, E.761, A.785, G.786, V.787, H.788, S.789, Q.829, I.840, E.841, P.909
- Ligands: MN.7, MN.8
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:R.715, A:R.715, A:H.754, A:L.756, A:E.761, A:G.786, A:S.789, A:S.789, A:E.841
- Water bridges: A:Q.829, A:N.843
- Salt bridges: A:R.715, A:H.788
- 1 x ORN: L-ornithine(Non-covalent)
- 1 x NET: TETRAETHYLAMMONIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., The structure of carbamoyl phosphate synthetase determined to 2.1 A resolution. Acta Crystallogr.,Sect.D (1999)
- Release Date
- 1998-06-17
- Peptides
- CARBAMOYL PHOSPHATE SYNTHETASE: A
CARBAMOYL PHOSPHATE SYNTHETASE: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
KB
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
- 7 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x GLN: GLUTAMINE(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 1 x ORN: L-ornithine(Non-covalent)
- 1 x NET: TETRAETHYLAMMONIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., The structure of carbamoyl phosphate synthetase determined to 2.1 A resolution. Acta Crystallogr.,Sect.D (1999)
- Release Date
- 1998-06-17
- Peptides
- CARBAMOYL PHOSPHATE SYNTHETASE: A
CARBAMOYL PHOSPHATE SYNTHETASE: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
KB
L