- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 8 x K: POTASSIUM ION(Non-covalent)
- 3 x MN: MANGANESE (II) ION(Non-covalent)
MN.4: 7 residues within 4Å:- Chain A: M.174, E.299, N.301
- Ligands: MN.5, K.7, PO4.16, ADP.17
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.299, A:E.299, H2O.3
MN.5: 7 residues within 4Å:- Chain A: H.243, Q.285, E.299
- Ligands: K.2, MN.4, PO4.16, ADP.17
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.299, H2O.3
MN.8: 3 residues within 4Å:- Chain A: Q.829, E.841
- Ligands: ADP.18
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.841, H2O.3
- 7 x CL: CHLORIDE ION(Non-functional Binders)
CL.11: 5 residues within 4Å:- Chain A: Q.93, T.173, M.174, S.177
- Ligands: NET.20
Ligand excluded by PLIPCL.12: 3 residues within 4Å:- Chain A: N.289, N.292, R.294
Ligand excluded by PLIPCL.13: 5 residues within 4Å:- Chain A: A.370, N.371, F.900, P.901, G.902
Ligand excluded by PLIPCL.14: 2 residues within 4Å:- Chain A: K.940, K.941
Ligand excluded by PLIPCL.15: 4 residues within 4Å:- Chain A: R.950, E.951, G.952, S.1018
Ligand excluded by PLIPCL.22: 2 residues within 4Å:- Chain B: V.284, K.285
Ligand excluded by PLIPCL.23: 4 residues within 4Å:- Chain A: E.549
- Chain B: F.15, I.113, D.114
Ligand excluded by PLIP- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.16: 12 residues within 4Å:- Chain A: M.174, G.175, H.243, Q.285, E.299, N.301, R.303, R.306
- Ligands: K.2, MN.4, MN.5, ADP.17
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:G.175, A:E.299, A:N.301, A:N.301
- Water bridges: A:Q.285, A:R.303, A:S.305, A:R.306
- Salt bridges: A:H.243, A:R.303, A:R.306
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.17: 25 residues within 4Å:- Chain A: R.129, I.167, R.169, T.173, M.174, G.175, G.176, D.207, E.208, S.209, L.210, I.211, E.215, M.240, G.241, I.242, H.243, T.244, Q.285, I.298, E.299, T.376
- Ligands: MN.4, MN.5, PO4.16
19 PLIP interactions:19 interactions with chain A- Hydrogen bonds: A:T.173, A:M.174, A:G.175, A:G.176, A:E.208, A:L.210, A:E.215, A:G.241, A:T.244, A:Q.285, A:E.299
- Water bridges: A:T.173, A:T.173, A:H.243, A:Q.285
- Salt bridges: A:R.129, A:R.129, A:R.169, A:H.243
ADP.18: 18 residues within 4Å:- Chain A: P.690, R.715, M.725, H.754, F.755, L.756, E.761, A.785, G.786, V.787, H.788, S.789, Q.829, I.840, E.841, P.909
- Ligands: MN.8, K.9
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:R.715, A:R.715, A:H.754, A:L.756, A:E.761, A:G.786, A:S.789, A:S.789, A:E.841
- Water bridges: A:D.753, A:H.788, A:E.841, A:E.841
- Salt bridges: A:R.715, A:H.788
- 1 x ORN: L-ornithine(Non-covalent)
- 1 x NET: TETRAETHYLAMMONIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., The small subunit of carbamoyl phosphate synthetase: snapshots along the reaction pathway. Biochemistry (1999)
- Release Date
- 1999-12-10
- Peptides
- CARBAMOYL PHOSPHATE SYNTHETASE: LARGE SUBUNIT: A
CARBAMOYL PHOSPHATE SYNTHETASE: SMALL SUBUNIT: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 8 x K: POTASSIUM ION(Non-covalent)
- 3 x MN: MANGANESE (II) ION(Non-covalent)
- 7 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 1 x ORN: L-ornithine(Non-covalent)
- 1 x NET: TETRAETHYLAMMONIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., The small subunit of carbamoyl phosphate synthetase: snapshots along the reaction pathway. Biochemistry (1999)
- Release Date
- 1999-12-10
- Peptides
- CARBAMOYL PHOSPHATE SYNTHETASE: LARGE SUBUNIT: A
CARBAMOYL PHOSPHATE SYNTHETASE: SMALL SUBUNIT: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
H